PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005062000
• symbol^?: —
• synonym:
• description^?: bacteriophage protein

  descriptions from strain specific annotations:

  • bacteriophage protein
  • phi77 ORF029-like protein
  • phage protein
  • pseudogene
• strand^?: -
• coordinates^?: 5228460..5228864
• synteny block^?: BlockID0039350
• occurrence^?: in 52% of 33 strains

⊟Orthologs

COL:
—
N315:
SA1770
NCTC8325:
—
Newman:
—
USA300_FPR3757:
SAUSA300_1935
04-02981:
SA2981_1921
08BA02176:
—
11819-97:
—
6850:
RSAU_000602
71193:
ST398NM01_2925
ECT-R 2:
ECTR2_1833
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_18750
JH1:
SaurJH1_2052
JH9:
SaurJH9_2016
JKD6008:
SAA6008_02015
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR2056
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_1945
Mu50:
SAV1959
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02094 (gpmA1)
TCH60:
HMPREF0772_11180
TW20:
SATW20_19520
USA300_TCH1516:
USA300HOU_1964
VC40:
—

⊟Genome Viewer

N315
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            MSVKVIGDKALERELEKRFGIKEMVKVQDKALIAGAKVIVEEVKKQLKPSKDTGALINEV
  USA300_FPR3757  MSVKVIGDKALERELENRFGTQAMLKVQDRALIAGAKVIVEEVKKQLKPSKDTGALINEV
                  ****************:*** : *:****:******************************
  
  N315            SFSKPEWINGKRTITVHWRGSKDRYKIVHLIEYGHVQKGTGKFIKPKAMGGVNRAIRQGQ
  USA300_FPR3757  SFSKPEWINGKRTITVHWRGSKDRYKIVHLIENGHVQKGTGKFIKPKAMGGVNRAIRQGQ
                  ******************************** ***************************
  
  N315            NKYFETLKRELKKL
  USA300_FPR3757  NKYFETLKRELKKL
                  **************