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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005062000
- symbol?: —
- synonym:
- description?: bacteriophage protein
- bacteriophage protein
- phi77 ORF029-like protein
- phage protein
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5228460..5228864
- synteny block?: BlockID0039350
- occurrence?: in 50% of 34 strains
tcp (np) : serogroup F prophage tail-completion/neck protein [1]
Most staphylococcal prophage require four small proteins to connect phage capsids to phage tails. Tail-completion or "neck" proteins form a stabilizing ring around the final major tail tube protein spiral, stabilizing the polymer at the capsid-facing tape measure protein terminus. TCP-stabilized phage tails are competent to bind mature capsids and form mature virions.
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1921
08BA02176:
—
11819-97:
—
6850:
RSAU_000602
71193:
ST398NM01_2925
ECT-R 2:
ECTR2_1833
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_18750
JH1:
SaurJH1_2052
JH9:
SaurJH9_2016
JKD6008:
SAA6008_02015
JKD6159:
—
JSNZ:
—
LGA251:
—
M013:
—
MRSA252:
SAR2056
MSHR1132:
—
MSSA476:
—
Mu3:
SAHV_1945
Mu50:
SAV1959
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02094 (gpmA1)
TCH60:
HMPREF0772_11180
TW20:
SATW20_19520
USA300_TCH1516:
USA300HOU_1964
VC40:
—
⊟Genome Viewer[edit | edit source]
| N315 | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
N315 MSVKVIGDKALERELEKRFGIKEMVKVQDKALIAGAKVIVEEVKKQLKPSKDTGALINEV
USA300_FPR3757 MSVKVIGDKALERELENRFGTQAMLKVQDRALIAGAKVIVEEVKKQLKPSKDTGALINEV
****************:*** : *:****:******************************
N315 SFSKPEWINGKRTITVHWRGSKDRYKIVHLIEYGHVQKGTGKFIKPKAMGGVNRAIRQGQ
USA300_FPR3757 SFSKPEWINGKRTITVHWRGSKDRYKIVHLIENGHVQKGTGKFIKPKAMGGVNRAIRQGQ
******************************** ***************************
N315 NKYFETLKRELKKL
USA300_FPR3757 NKYFETLKRELKKL
**************
- ↑ Anait Seul, Sandrine Brasilès, Isabelle Petitpas, Rudi Lurz, Valérie Campanacci, Christian Cambillau, Frank Weise, Mohamed Zairi, Paulo Tavares, Isabelle Auzat
Biogenesis of a Bacteriophage Long Non-Contractile Tail.
J Mol Biol: 2021, 433(18);167112
[PubMed:34153288] [WorldCat.org] [DOI] (I p)