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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005193000
- symbol?: —
- synonym:
- description?: succinyl-diaminopimelate desuccinylase
- succinyl-diaminopimelate desuccinylase
- ArgE/DapE family deacylase
- succinyl-diaminopimelate desuccinylase, putative
- Acetylornithine deacetylase
- peptidase, ArgE/DapE family protein
- probable succinyl-diaminopimelate desuccinylase (sdap)
- pseudogene
- putative peptidase
- putative succinyl-diaminopimelate desuccinylase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5362184..5363403
- synteny block?: BlockID0040250
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1968
08BA02176:
C248_2029
11819-97:
MS7_2038 (dapE)
6850:
RSAU_001839 (dapE)
71193:
ST398NM01_2062
ECT-R 2:
ECTR2_1878
ED133:
SAOV_2043
ED98:
SAAV_2074
HO 5096 0412:
SAEMRSA15_19290
JH1:
SaurJH1_2101
JH9:
SaurJH9_2064
JKD6008:
SAA6008_02060 (argE)
JKD6159:
SAA6159_01941 (argE)
LGA251:
SARLGA251_18250
M013:
M013TW_1978
MRSA252:
SAR2109
MSHR1132:
SAMSHR1132_18490
MSSA476:
SAS1926
Mu3:
SAHV_1992
Mu50:
SAV2006
MW2:
MW1943
RF122:
SAB1877
ST398:
SAPIG2062
T0131:
SAT0131_02143
TCH60:
HMPREF0772_11176 (dapE)
TW20:
SATW20_20030
USA300_TCH1516:
USA300HOU_2014
VC40:
SAVC_08975
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
N315 ---------------------MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLKDLFDK
NCTC8325 ---------------------MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLTDLFDK
Newman MFKNKNYVYINIYTTLKGVSLMTTFSEKEKIQLLADIVELQTENNNEIDVCNYLTDLFDK
USA300_FPR3757 ---------------------MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLTDLFDK
*********************************.*****
N315 YDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWTYPPFQLTEKAGKLY
NCTC8325 YDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWSYPPFQLTEKDGKLY
Newman YDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWSYPPFQLTEKDGKLY
USA300_FPR3757 YDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWSYPPFQLTEKDGKLY
*********************************************:********* ****
N315 GRGTTDMKGGLMALVITLIELKEQNQLPQGTIRLLATAGEEKEQEGAKLLADKGYLDDVD
NCTC8325 GRGTTDMKGGLMALVVSLIELKEQNELPHGTIRLLATAGEEKEQEGAKLLADKGYLDDVD
Newman GRGTTDMKGGLMALVVSLIELKEQNELPHGTIRLLATAGEEKEQEGAKLLADKGYLDDVD
USA300_FPR3757 GRGTTDMKGGLMALVVSLIELKEQNELPHGTIRLLATAGEEKEQEGAKLLADKGYLDDVD
***************::********:**:*******************************
N315 GLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNQFKEKYSEL
NCTC8325 GLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNLFKEKYSEL
Newman GLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNLFKEKYSEL
USA300_FPR3757 SLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNLFKEKYSEL
.************************************************** ********
N315 KKHDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNV
NCTC8325 KQQDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNV
Newman KQQDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNV
USA300_FPR3757 KQQDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNV
*::*********************************************************
N315 RPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQ
NCTC8325 RPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQ
Newman RPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQ
USA300_FPR3757 RPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQ
************************************************************
N315 DEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEA
NCTC8325 DEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEA
Newman DEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEA
USA300_FPR3757 DEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEA
************************************************************
N315 SIQYLKEK
NCTC8325 SIQYLKEK
Newman SIQYLKEK
USA300_FPR3757 SIQYLKEK
********