PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005218000
• symbol^?: —
• synonym:
• description^?: terminase small subunit

  descriptions from strain specific annotations:

  • terminase small subunit
  • phage terminase family protein
  • phage terminase
  • phage terminase small subunit
  • bacteriophage terminase small subunit
  • pseudogene
  • putative terminase small subunit
• strand^?: -
• coordinates^?: 5379698..5380267
• synteny block^?: BlockID0040420
• occurrence^?: in 48% of 33 strains

⊟Orthologs

COL:
SACOL2014
N315:
SA1820
NCTC8325:
SAOUHSC_02250
Newman:
NWMN_1935
USA300_FPR3757:
SAUSA300_1981
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_19350
JH1:
—
JH9:
—
JKD6008:
SAA6008_02066
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1932
Mu3:
SAHV_1998
Mu50:
SAV2012
MW2:
MW1949
RF122:
SAB1894c
ST398:
—
T0131:
SAT0131_02151
TCH60:
—
TW20:
SATW20_20100
USA300_TCH1516:
USA300HOU_2021
VC40:
SAVC_09005

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MSELTAKQARFVNEYIRTLNVTQSAIKAGYNANSAHVTACRLLKKPHIKQYIQEQKDKII
  N315            MSELTAKQARFVNEYIRTLNVTQSAIKAGYSANSAHVTGCRLLKKPHIKQYIQEQKDKVI
  NCTC8325        MSELTAKQARFVNEYIRTLNVTQSAIKAGYNANSAHVTACRLLKKPHIKQYIQEQKDKII
  Newman          MSELTAKQARFVNEYIRTLNVTQSAIKAGYNANSAHVTACRLLKKPHIKQYIQEQKDKII
  USA300_FPR3757  MSELTAKQARFVNEYIRTLNVTQSAIKAGYNANSAHVTACRLLKKPHIKQYIQEQKDKII
                  ******************************.*******.*******************:*
  
  COL             DENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPQSGKVQLVYNEHVELIEVPIK
  N315            DENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPQSGKVQLVYNEHVELVEVPIK
  NCTC8325        DENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPQSGKVQLVYNEHVELIEVPIK
  Newman          DENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPQSGKVQLVYNEHVELIEVPIK
  USA300_FPR3757  DENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPQSGKVQLVYNEHVELIEVPIK
                  ******************************************************:*****
  
  COL             PSDRLKARDMLGKYHKLFTDKHDINGNVPIFINIGEWDGGDEGLDKAVKDVSNDNPNHTV
  N315            PSDRLKARDMLGKYHKLFTDKHDINGNVPIFINIGEWDGDDEDLDKTVQEVSNANPNHTV
  NCTC8325        PSDRLKARDMLGKYHKLFTDKHDINGNVPIFINIGEWDGGDEGLDKAVKDVSNDNPNHTV
  Newman          PSDRLKARDMLGKYHKLFTDKHDINGNVPIFINIGEWDGGDEGLDKAVKDVSNDNPNHTV
  USA300_FPR3757  PSDRLKARDMLGKYHKLFTDKHDINGNVPIFINIGEWDGGDEGLDKAVKDVSNDNPNHTV
                  ***************************************.**.***:*::*** ******
  
  COL             IVDDIPLEDYESIRFL
  N315            IVDDIPLED-------
  NCTC8325        IVDDIPLEDYESIRFL
  Newman          IVDDIPLEDYESIRFL
  USA300_FPR3757  IVDDIPLEDYESIRFL
                  *********