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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1820 [new locus tag: SA_RS10450 ]
  • pan locus tag?: SAUPAN005218000
  • symbol: SA1820
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1820 [new locus tag: SA_RS10450 ]
  • symbol: SA1820
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2061935..2062504
  • length: 570
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAGTGAGTTAACGGCAAAACAAGCGCGTTTTGTGAATGAGTATATAAGAACACTTAAT
    GTAACACAAAGTGCCATAAAAGCAGGCTATAGCGCAAATAGTGCACATGTGACAGGATGT
    AGGTTATTAAAGAAGCCACACATCAAGCAATATATACAAGAACAAAAAGATAAGGTTATA
    GATGAGAATGTATTAACCGCAAAAGAGTTACTACATGTGCTTACGAATGCGGCAGTCGGT
    GATGAAACAGAAACGAAAGAAGTTGTGGTCAAACGTGGAGAATATAAAGAGAATCCACAA
    AGTGGCAAAGTACAGTTAGTCTATAACGAACATGTTGAACTGGTAGAGGTGCCAATTAAG
    CCAAGTGATCGTTTAAAAGCTCGTGATATGTTGGGTAAATACCATAAGTTATTTACAGAT
    AAGCATGATATTAACGGGAATGTGCCTATATTCATTAATATTGGTGAATGGGATGGCGAT
    GATGAAGATTTAGATAAGACGGTACAAGAGGTATCTAACGCTAATCCTAATCATACTGTG
    ATTGTGGATGATATACCGTTAGAGGATTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    570

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1820 [new locus tag: SA_RS10450 ]
  • symbol: SA1820
  • description: hypothetical protein
  • length: 189
  • theoretical pI: 5.34333
  • theoretical MW: 21358.9
  • GRAVY: -0.594709

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Phage terminase, small subunit
    Phages, Prophages, Transposable elements, Plasmids Pathogenicity islands Staphylococcal pathogenicity islands SaPI  Putative terminase, superantigen-encoding pathogenicity islands SaPI
  • PFAM:
    no clan defined Terminase_2; Terminase small subunit (PF03592; HMM-score: 117.6)
    and 1 more
    DUF3213; Protein of unknown function (DUF3213) (PF11491; HMM-score: 14.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 0.83
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.016994
    • TAT(Tat/SPI): 0.006853
    • LIPO(Sec/SPII): 0.027984
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSELTAKQARFVNEYIRTLNVTQSAIKAGYSANSAHVTGCRLLKKPHIKQYIQEQKDKVIDENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPQSGKVQLVYNEHVELVEVPIKPSDRLKARDMLGKYHKLFTDKHDINGNVPIFINIGEWDGDDEDLDKTVQEVSNANPNHTVIVDDIPLED

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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