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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA1822 [new locus tag: SA_RS10460 ]
- pan locus tag?: SAUPAN005220000
- symbol: SA1822
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Additional information (user-provided)[edit | edit source]
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA1822 [new locus tag: SA_RS10460 ]
- symbol: SA1822
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2062845..2063372
- length: 528
- essential: no DEG
⊟Accession numbers[edit | edit source]
- Gene ID: 1124714 NCBI
- RefSeq: NP_375123 NCBI
- BioCyc: see SA_RS10460
- MicrobesOnline: 104149 MicrobesOnline
⊟Phenotype[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟DNA sequence[edit | edit source]
- 1
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481ATGAAACTGCTTAAAACGAAGAATTGTTTATATTATCGTAATGGCGACAATAAACTATCT
GAGTATCAACTATTAACGCAATTTAACCCAGCATTTATTAATAAAAAAATTAAGATGTGT
GAATTCCAAATTGAAAGTATGTACCATATGAGTGCGTCGACCACAACATGTGATGAAATA
ATGGGGGTCGTGTCTGTCTCATATCCGATTGAAAAATTAGTTATCAAAATTATTGAAACA
AAAGCAGGGTTACAAAACTATAAAAATAGATCTATAAATAATATGGCGTTGTTGAAAAAG
GTACTAAATCATTATACAGAAAAAGAGCAGAAGCAAGTTGTAAAATATATGCGTTCAAAT
GGACGATATAAGCCCTACAACGTCATTGAACGCTTACAAGTTGATTTGTATCAAGCAAGT
ATTAAACAACGTTCAGAACGTCAAAAACAAAGAAATACAGCAATTGAAAACAGTAAGATT
GCACGAGTAAATGCATATCACCAATCTTCATATGTAAAAGTGGTGTAA60
120
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528
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA1822 [new locus tag: SA_RS10460 ]
- symbol: SA1822
- description: hypothetical protein
- length: 175
- theoretical pI: 10.237
- theoretical MW: 20591.8
- GRAVY: -0.621143
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Hypothetical SAV0798 homolog in superantigen-encoding pathogenicity islands SaPI
- PFAM: no clan defined PSDC; Phophatidylserine decarboxylase (PF12588; HMM-score: 16.1)Zn_chelatase (CL0687) CxC4; CxC4 like cysteine cluster associated with KDZ transposases (PF18717; HMM-score: 14.3)no clan defined PsiA; PsiA protein (PF06952; HMM-score: 13.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.4742
- Cytoplasmic Membrane Score: 0.0046
- Cell wall & surface Score: 0.0009
- Extracellular Score: 0.5203
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.014732
- TAT(Tat/SPI): 0.000206
- LIPO(Sec/SPII): 0.0016
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKLLKTKNCLYYRNGDNKLSEYQLLTQFNPAFINKKIKMCEFQIESMYHMSASTTTCDEIMGVVSVSYPIEKLVIKIIETKAGLQNYKNRSINNMALLKKVLNHYTEKEQKQVVKYMRSNGRYKPYNVIERLQVDLYQASIKQRSERQKQRNTAIENSKIARVNAYHQSSYVKVV
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: SA1820 < SA1821 < SA1822
⊟Regulation[edit | edit source]
- regulator:
⊟Additional information (user-provided)[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Other information (user-provided)[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]