PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005298000
• symbol^?: gcp
• synonym:
• description^?: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD

  descriptions from strain specific annotations:

  • tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
  • DNA-binding/iron metalloprotein/AP endonuclease
  • putative DNA-binding/iron metalloprotein/AP endonuclease
  • O-sialoglycoprotein endopeptidase, putative
  • M22 family O-sialoglycoprotein endopeptidase
  • metalloendopeptidase, , glycoprotease family protein
  • O-sialoglycoprotein endopeptidase
  • O-sialoglycoprotein endopeptidase (Glycoprotease)
  • putative glycoprotease
  • putative tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
  • UGMP family protein
  • YgjD/Kae1/Qri7 family protein
• strand^?: -
• coordinates^?: 5460728..5461753
• synteny block^?: BlockID0040980
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2038
N315:
SA1854
NCTC8325:
SAOUHSC_02277
Newman:
NWMN_1956
USA300_FPR3757:
SAUSA300_2002
04-02981:
SA2981_1990
08BA02176:
C248_2054
11819-97:
MS7_2061 (gcp)
6850:
RSAU_001882 (gcp)
71193:
ST398NM01_2088
ECT-R 2:
ECTR2_1900
ED133:
SAOV_2086c
ED98:
SAAV_2097
HO 5096 0412:
SAEMRSA15_19570
JH1:
SaurJH1_2123 (gcp)
JH9:
SaurJH9_2086 (gcp)
JKD6008:
SAA6008_02087
JKD6159:
SAA6159_01962
LGA251:
SARLGA251_18520
M013:
M013TW_2002
MRSA252:
SAR2136 (gcp)
MSHR1132:
SAMSHR1132_18710
MSSA476:
SAS1954 (gcp)
Mu3:
SAHV_2034
Mu50:
SAV2049 (gcp)
MW2:
MW1973 (gcp)
RF122:
SAB1934c (gcp)
ST398:
SAPIG2088
T0131:
SAT0131_02202
TCH60:
HMPREF0772_11150 (gcp)
TW20:
SATW20_21890
USA300_TCH1516:
USA300HOU_2044
VC40:
SAVC_09125

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTKDILILAVETSCDETSVSVIKNGRDILSNTVLSQIESHKRFGGVVPEVASRHHVEGIT
  N315            MTKDILILAVETSCDETSVSVIKNGRDILSNTVLSQIESHKRFGGVVPEVASRHHVEGIT
  NCTC8325        MTKDILILAVETSCDETSVSVIKNGRDILSNTVLSQIESHKRFGGVVPEVASRHHVEGIT
  Newman          MTKDILILAVETSCDETSVSVIKNGRDILSNTVLSQIESHKRFGGVVPEVASRHHVEGIT
  USA300_FPR3757  MTKDILILAVETSCDETSVSVIKNGRDILSNTVLSQIESHKRFGGVVPEVASRHHVEGIT
                  ************************************************************
  
  COL             ATINEALGDADVSIEDIDAIAVTEGPGLIGALLIGVNAAKALAFAYDKPLIPVHHIAGHI
  N315            TTINEALVDADVSMEDIDAIAVTEGPGLIGALLIGVNAAKALAFAYDKPLIPVHHIAGHI
  NCTC8325        ATINEALGDADVSIEDIDAIAVTEGPGLIGALLIGVNAAKALAFAYDKPLIPVHHIAGHI
  Newman          ATINEALGDADVSIEDIDAIAVTEGPGLIGALLIGVNAAKALAFAYDKPLIPVHHIAGHI
  USA300_FPR3757  ATINEALGDADVSIEDIDAIAVTEGPGLIGALLIGVNAAKALAFAYDKPLIPVHHIAGHI
                  :****** *****:**********************************************
  
  COL             YANHIEEPLTFPLIALIVSGGHTELVYMKDHLSFEVIGETRDDAVGEAYDKVARTIGLNY
  N315            YANHIEEPLTFPLIALIVSGGHTELVYMKDHLSFEVIGETRDDAVGEAYDKVARTIGLNY
  NCTC8325        YANHIEEPLTFPLIALIVSGGHTELVYMKDHLSFEVIGETRDDAVGEAYDKVARTIGLNY
  Newman          YANHIEEPLTFPLIALIVSGGHTELVYMKDHLSFEVIGETRDDAVGEAYDKVARTIGLNY
  USA300_FPR3757  YANHIEEPLTFPLIALIVSGGHTELVYMKDHLSFEVIGETRDDAVGEAYDKVARTIGLNY
                  ************************************************************
  
  COL             PGGPQVDRLAAEGEDTYSFPRVWLDKDSYDFSFSGLKSAVINQLHNQRQKNIPIIEANVA
  N315            PGGPQVDRLAAEGEDTYSFPRVWLDKDSYDFSFSGLKSAVINQLHNQRQKNIPIIEANVA
  NCTC8325        PGGPQVDRLAAEGEDTYSFPRVWLDKDSYDFSFSGLKSAVINQLHNQRQKNIPIIEANVA
  Newman          PGGPQVDRLAAEGEDTYSFPRVWLDKDSYDFSFSGLKSAVINQLHNQRQKNIPIIEANVA
  USA300_FPR3757  PGGPQVDRLAAEGEDTYSFPRVWLDKDSYDFSFSGLKSAVINQLHNQRQKNIPIIEANVA
                  ************************************************************
  
  COL             TSFQNSVVEVLTFKAIQACKEYGVQRLIVAGGVASNKGLRQSLADQCKVNDIQLTIPSPK
  N315            TSFQNSVVEVLTFKAIQACKEYSVQRLIVAGGVASNKGLRQSLADQCKVNDIQLTIPSPK
  NCTC8325        TSFQNSVVEVLTFKAIQACKEYGVQRLIVAGGVASNKGLRQSLADQCKVNDIQLTIPSPK
  Newman          TSFQNSVVEVLTFKAIQACKEYGVQRLIVAGGVASNKGLRQSLADQCKVNDIQLTIPSPK
  USA300_FPR3757  TSFQNSVVEVLTFKAIQACKEYGVQRLIVAGGVASNKGLRQSLADQCKVNDIQLTIPSPK
                  **********************.*************************************
  
  COL             LCTDNAAMIGVAGHYLYQQGRFADLALNGHSNIDLEEYSAE
  N315            LCTDNAAMIGVAGHSLYQQGRFADLALNGHSNIDLEEYSAE
  NCTC8325        LCTDNAAMIGVAGHYLYQQGRFADLALNGHSNIDLEEYSAE
  Newman          LCTDNAAMIGVAGHYLYQQGRFADLALNGHSNIDLEEYSAE
  USA300_FPR3757  LCTDNAAMIGVAGHYLYQQGRFADLALNGHSNIDLEEYSAE
                  ************** **************************