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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005310000
- symbol?: leuD
- synonym:
- description?: 3-isopropylmalate dehydratase small subunit
- 3-isopropylmalate dehydratase small subunit
- isopropylmalate isomerase small subunit
- 3-isopropylmalate dehydratase, small subunit
- 3-isopropylmalate dehydratase small subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5472685..5473257
- synteny block?: BlockID0041100
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2001 (leuD)
08BA02176:
C248_2066 (leuD)
11819-97:
MS7_2072 (leuD)
6850:
RSAU_001893 (leuD)
71193:
ST398NM01_2099
ECT-R 2:
ECTR2_1911 (leuD)
ED133:
SAOV_2097 (leuD)
ED98:
SAAV_2108 (leuD)
HO 5096 0412:
SAEMRSA15_19680 (leuD)
JH1:
SaurJH1_2134 (leuD)
JH9:
SaurJH9_2097 (leuD)
JKD6008:
SAA6008_02098 (leuD)
JKD6159:
SAA6159_01973 (leuD)
LGA251:
SARLGA251_18630 (leuD)
M013:
M013TW_2013
MRSA252:
SAR2147 (leuD)
MSHR1132:
SAMSHR1132_18830
MSSA476:
SAS1965 (leuD)
Mu3:
SAHV_2045 (leuD)
Mu50:
SAV2060 (leuD)
MW2:
MW1984 (leuD)
RF122:
SAB1945 (leuD)
ST398:
SAPIG2099 (leuD)
T0131:
SAT0131_02213
TCH60:
HMPREF0772_11138 (leuD)
TW20:
SATW20_22000 (leuD)
USA300_TCH1516:
USA300HOU_2055 (leuD)
VC40:
SAVC_09180 (leuD)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MAAIKPITTYKGKIVPLFNDNIDTDQIIPKVHLKRISKSGFGPFAFDEWRYLPDGSDNPD
N315 MAAIKPITTYKGKIVPLFNDNIDTDQIIPKVHLKRISKSGFGPFAFDEWRYLPDGSDNPD
NCTC8325 MAAIKPITTYKGKIVPLFNDNIDTDQIIPKVHLKRISKSGFGPFAFDEWRYLPDGSDNPD
Newman MAAIKPITTYKGKIVPLFNDNIDTDQIIPKVHLKRISKSGFGPFAFDEWRYLPDGSDNPD
USA300_FPR3757 MAAIKPITTYKGKIVPLFNDNIDTDQIIPKVHLKRISKSGFGPFAFDEWRYLPDGSDNPD
************************************************************
COL FNPNKPQYKGASILITGDNFGCGSSREHAAWALKDYGFHIIIAGSFSDIFYMNCTKNAML
N315 FNPNKPQYKGASILITGDNFGCGSSREHAAWALKDYGFHIIIAGSFSDIFYMNCTKNAML
NCTC8325 FNPNKPQYKGASILITGDNFGCGSSREHAAWALKDYGFHIIIAGSFSDIFYMNCTKNAML
Newman FNPNKPQYKGASILITGDNFGCGSSREHAAWALKDYGFHIIIAGSFSDIFYMNCTKNAML
USA300_FPR3757 FNPNKPQYKGASILITGDNFGCGSSREHAAWALKDYGFHIIIAGSFSDIFYMNCTKNAML
************************************************************
COL PIVLEKSAREHLAQYVEIEVDLPNQTVSSPDKRFHFEIDETWKNKLVNGLDDIAITLQYE
N315 PIVLEKSAREHLAQYEEIEIDLPNQTVSSPDKRFHFEIDETWKNKLVNGLDDIAITLQYE
NCTC8325 PIVLEKSAREHLAQYVEIEVDLPNQTVSSPDKRFHFEIDETWKNKLVNGLDDIAITLQYE
Newman PIVLEKSAREHLAQYVEIEVDLPNQTVSSPDKRFHFEIDETWKNKLVNGLDDIAITLQYE
USA300_FPR3757 PIVLEKSAREHLAQYVEIEVDLPNQTVSSPDKRFHFEIDETWKNKLVNGLDDIAITLQYE
*************** ***:****************************************
COL SLIEKYEKSL
N315 SLIEKYEKSL
NCTC8325 SLIEKYEKSL
Newman SLIEKYEKSL
USA300_FPR3757 SLIEKYEKSL
**********