Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN005410000
- symbol?: tdk
- synonym:
- description?: thymidine kinase
- thymidine kinase
- putative thymidine kinase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5569877..5570476
- synteny block?: BlockID0042060
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2059 (tdk)
08BA02176:
C248_2133
11819-97:
MS7_2135 (tdk)
6850:
RSAU_001957 (tdk)
71193:
ST398NM01_2161
ECT-R 2:
ECTR2_1975
ED133:
SAOV_2160c
ED98:
SAAV_2174 (tdk)
HO 5096 0412:
SAEMRSA15_20270
JH1:
SaurJH1_2193
JH9:
SaurJH9_2155
JKD6008:
SAA6008_02157 (tdk)
JKD6159:
SAA6159_02033 (tdk)
LGA251:
SARLGA251_19200
M013:
M013TW_2078
MRSA252:
SAR2207
MSHR1132:
SAMSHR1132_19420
MSSA476:
SAS2022
Mu3:
SAHV_2103 (tdk)
Mu50:
SAV2119 (tdk)
MW2:
MW2043 (tdk)
RF122:
SAB2003c
ST398:
SAPIG2161 (tdk)
T0131:
SAT0131_02282 (spxA)
TCH60:
HMPREF0772_11072 (tdk)
TW20:
SATW20_22570
USA300_TCH1516:
USA300HOU_2107 (tdk)
VC40:
SAVC_09470
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNG
N315 MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNG
NCTC8325 MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNG
Newman MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNG
USA300_FPR3757 MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNG
************************************************************
COL NAIEAINISKASEIMTHDLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDF
N315 NAIEAINISKASEIMTHNLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDF
NCTC8325 NAIEAINISKASEIMTHDLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDF
Newman NAIEAINISKASEIMTHDLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDF
USA300_FPR3757 NAIEAINISKASEIMTHDLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDF
*****************:******************************************
COL RGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYE
N315 RGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYE
NCTC8325 RGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYE
Newman RGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYE
USA300_FPR3757 RGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYE
************************************************************
COL PRCRAHHIVAPSDNNKEEL
N315 PRCRAHHIVAPSDNNKEEL
NCTC8325 PRCRAHHIVAPSDNNKEEL
Newman PRCRAHHIVAPSDNNKEEL
USA300_FPR3757 PRCRAHHIVAPSDNNKEEL
*******************