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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005413000
- symbol?: rho
- synonym:
- description?: transcription termination factor Rho
- transcription termination factor Rho
- putative methicillin resistance expression factor
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5571293..5572609
- synteny block?: BlockID0042090
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2061 (rho)
08BA02176:
C248_2135 (rho)
11819-97:
MS7_2137 (rho)
6850:
RSAU_001959 (rho)
71193:
ST398NM01_2163
ECT-R 2:
ECTR2_1977 (rho)
ED133:
SAOV_2162c
ED98:
SAAV_2176 (rho)
HO 5096 0412:
SAEMRSA15_20290 (rho)
JH1:
SaurJH1_2195 (rho)
JH9:
SaurJH9_2157 (rho)
JKD6008:
SAA6008_02159 (rho)
JKD6159:
SAA6159_02035 (rho)
LGA251:
SARLGA251_19220 (rho)
M013:
M013TW_2080
MRSA252:
SAR2209 (rho)
MSHR1132:
SAMSHR1132_19440
MSSA476:
SAS2024 (rho)
Mu3:
SAHV_2105 (rho)
Mu50:
SAV2121 (rho)
MW2:
MW2045 (rho)
RF122:
SAB2005c (rho)
ST398:
SAPIG2163 (rho)
T0131:
SAT0131_02284
TCH60:
HMPREF0772_11069 (rho)
TW20:
SATW20_22590 (rho)
USA300_TCH1516:
USA300HOU_2109 (rho)
VC40:
SAVC_09480 (rho)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MPERERTSPQYESFHELYKNYTTKELTQKAKTLKLTNYSKLNKKELVLAIMEAQMEKDGN
N315 MPERERTSPQYESFHELYKNYTTKELTQKAKTLKLTNYSKLNKKELVIAIMEAQMEKDGN
NCTC8325 MPERERTSPQYESFHELYKNYTTKELTQKAKTLKLTNYSKLNKKELVLAIMEAQMEKDGN
Newman MPERERTSPQYESFHELYKNYTTKELTQKAKTLKLTNYSKLNKKELVLAIMEAQMEKDGN
USA300_FPR3757 MPERERTSPQYESFHELYKNYTTKELTQKAKTLKLTNYSKLNKKELVLAIMEAQMEKDGN
***********************************************:************
COL YYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK
N315 YYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK
NCTC8325 YYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK
Newman YYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK
USA300_FPR3757 YYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK
************************************************************
COL YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPDERIKLETETQNYSTRIMDLVTPIGLGQ
N315 YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPDERIKLETETQNYSTRIMDLVTPIGLGQ
NCTC8325 YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPDERIKLETEIQNYSTRIMDLVTPIGLGQ
Newman YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPDERIKLETETQNYSTRIMDLVTPIGLGQ
USA300_FPR3757 YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPDERIKLETETQNYSTRIMDLVTPIGLGQ
***************************************** ******************
COL RGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVGERPEEVTDLERSVEAAEVVHST
N315 RGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVGERPEEVTDLERSVEAAEVVHST
NCTC8325 RGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVGERPEEVTDLERSVEAAEVVHST
Newman RGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVGERPEEVTDLERSVEAAEVVHST
USA300_FPR3757 RGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVGERPEEVTDLERSVEAAEVVHST
************************************************************
COL FDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
N315 FDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
NCTC8325 FDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
Newman FDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
USA300_FPR3757 FDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP
************************************************************
COL ASLHKPKAFFGAARNIEAGGSLTILATALVDTGSRMDDMIYEEFKGTGNMELHLDRKLSE
N315 ASLHKPKAFFGAARNIEAGGSLTILATALVDTGSRMDDMIYEEFKGTGNMELHLDRKLSE
NCTC8325 ASLHKPKAFFGAARNIEAGGSLTILATALVDTGSRMDDMIYEEFKGTGNMELHLDRKLSE
Newman ASLHKPKAFFGAARNIEAGGSLTILATALVDTGSRMDDMIYEEFKGTGNMELHLDRKLSE
USA300_FPR3757 ASLHKPKAFFGAARNIEAGGSLTILATALVDTGSRMDDMIYEEFKGTGNMELHLDRKLSE
************************************************************
COL RRIFPAIDIGRSSTRKEELLISKSELDTLWQLRNLFTDSTDFTERFIRKLKRSKNNEDFF
N315 RRIFPAIDIGRSSTRKEELLISKSELDTLWQLRNLFTDSTDFTERFIRKLKRSKNNEDFF
NCTC8325 RRIFPAIDIGRSSTRKEELLISKSELDTLWQLRNLFTDSTDFTERFIRKLKRSKNNEDFF
Newman RRIFPAIDIGRSSTRKEELLISKSELDTLWQLRNLFTDSTDFTERFIRKLKRSKNNEDFF
USA300_FPR3757 RRIFPAIDIGRSSTRKEELLISKSELDTLWQLRNLFTDSTDFTERFIRKLKRSKNNEDFF
************************************************************
COL KQLQKSAEESTKTGRPII
N315 KQLQKSAEESTKTGRPII
NCTC8325 KQLQKSAEESTKTGRPII
Newman KQLQKSAEESTKTGRPII
USA300_FPR3757 KQLQKSAEESTKTGRPII
******************