PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005511000
• symbol^?: tnp4
• synonym:
• description^?: ISL3 family transposase

  descriptions from strain specific annotations:

  • ISL3 family transposase
  • IS1181, transposase
  • transposase for IS1181
  • IS1181 transposase
  • pseudogene
• strand^?: +
• coordinates^?: 5675192..5677168
• synteny block^?: BlockID0042930
• occurrence^?: in 27% of 33 strains

⊟Orthologs

COL:
SACOL2155
N315:
—
NCTC8325:
SAOUHSC_02410
Newman:
NWMN_2066 (tnp)
USA300_FPR3757:
SAUSA300_2115 (tnp)
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_02203
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02330
TCH60:
—
TW20:
SATW20_23000
USA300_TCH1516:
USA300HOU_2155
VC40:
SAVC_09690

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  Newman          MTKPKLKETSAPMCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPSACYC
  USA300_FPR3757  MTKPKLKETSAPMCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPSACYC
                  ************************************************************
  
  Newman          CGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIVDESCFI
  USA300_FPR3757  CGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIVDESCFI
                  ************************************************************
  
  Newman          SRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLPEHIAMDEF
  USA300_FPR3757  SRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLPEHIAMDEF
                  ************************************************************
  
  Newman          KSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPY
  USA300_FPR3757  KSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPY
                  ************************************************************
  
  Newman          VRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKGPDYTIFKNNWKVLLMD
  USA300_FPR3757  VRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKGPDYTIFKNNWKVLLMD
                  ************************************************************
  
  Newman          TSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRHSYELVQGLRKDLRLCNWPKFINR
  USA300_FPR3757  TSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRHSYELVQGLRKDLRLCNWPKFINR
                  ************************************************************
  
  Newman          LNSVSKKSVSKGVWKVVKYYRKHQRMLRNTIYYPAFNNGAIEGINNKIKLIK
  USA300_FPR3757  LNSVSKKSVSKGVWKVVKYYRKHQRMLRNTIYYPAFNNGAIEGINNKIKLIK
                  ****************************************************