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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005555000
- symbol?: sepA
- synonym:
- description?: multidrug resistance efflux pump SepA
- multidrug resistance efflux pump SepA
- multidrug efflux transporter SepA
- SmrB
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5699286..5699753
- synteny block?: BlockID0043160
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2106 (smrB)
08BA02176:
C248_2204
11819-97:
MS7_2191 (sepA)
6850:
RSAU_002012
71193:
ST398NM01_2228
ECT-R 2:
ECTR2_2029
ED133:
SAOV_2215c
ED98:
SAAV_2229
HO 5096 0412:
SAEMRSA15_20730
JH1:
SaurJH1_2237
JH9:
SaurJH9_2199
JKD6008:
SAA6008_02206
JKD6159:
SAA6159_02079
LGA251:
SARLGA251_19630
M013:
M013TW_2134
MRSA252:
SAR2259
MSHR1132:
SAMSHR1132_20000
MSSA476:
SAS2069
Mu3:
SAHV_2151 (sepA)
Mu50:
SAV2167
MW2:
MW2094
RF122:
SAB2049c
ST398:
SAPIG2228
T0131:
SAT0131_02336
TCH60:
HMPREF0772_11024
TW20:
SATW20_23030
USA300_TCH1516:
USA300HOU_2159
VC40:
SAVC_09710
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MIVNYLKHKFYNLLTTMIVLFIFVLSGAIFLTFLGFGLYGLSRILIYFRLGDFTYNRSMY
N315 MIVNYLKHKFYNLLTTMIVLFIFVLSGAIFLTFLGFGLYGLSRILIYFRLGDFTYNRSMY
NCTC8325 MIVNYLKHKFYNLLTTMIVLFIFVLSGAIFLTFLGFGLYGLSRILIYFRLGDFTYNRSMY
Newman MIVNYLKHKFYNLLTTMIVLFIFVLSGAIFLTFLGFGLYGLSRILIYFRLGDFTYNRSMY
USA300_FPR3757 MIVNYLKHKFYNLLTTMIVLFIFVLSGAIFLTFLGFGLYGLSRILIYFRLGDFTYNRSMY
************************************************************
COL DNLLYYGSYIIFGYFIIFAVEHLMDYFRKMLPENAYFRGATFHLISYTVATTLFYFIIHL
N315 DNLLYYGSYIIFGYFIIFAVEHLMDYFRKMLPENAYFRGATFHLISYTVATTLFYFIIHL
NCTC8325 DNLLYYGSYIIFGYFIIFAVEHLMDYFRKMLPENAYFRGATFHLISYTVATTLFYFIIHL
Newman DNLLYYGSYIIFGYFIIFAVEHLMDYFRKMLPENAYFRGATFHLISYTVATTLFYFIIHL
USA300_FPR3757 DNLLYYGSYIIFGYFIIFAVEHLMDYFRKMLPENAYFRGATFHLISYTVATTLFYFIIHL
************************************************************
COL NYVYINIDFWVIMVIIGFLYVCKLQFYPESKNLNNRK
N315 NYVYINIDFWVIMVIIGFLYVCKLQFYPESKNLNNRK
NCTC8325 NYVYINIDFWVIMVIIGFLYVCKLQFYPESKNLNNRK
Newman NYVYINIDFWVIMVIIGFLYVCKLQFYPESKNLNNRK
USA300_FPR3757 NYVYINIDFWVIMVIIGFLYVCKLQFYPESKNLNNRK
*************************************