PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005623000
• symbol^?: —
• synonym:
• description^?: toxin

  descriptions from strain specific annotations:

  • toxin
  • truncated MHC class II analog protein
  • MAP domain-containing protein
  • Map domain protein
  • surface protein
  • exported protein
  • extracellular adherence protein Eap
  • outer membrane protein
  • pseudogene
  • surface protein, putative
  • Truncated cell surface protein map-w
• strand^?: +
• coordinates^?: 5759627..5760052
• synteny block^?: BlockID0043760
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2197
N315:
SA2006
NCTC8325:
SAOUHSC_02466
Newman:
NWMN_2109
USA300_FPR3757:
SAUSA300_2164
04-02981:
SA2981_2142 (map-w)
08BA02176:
C248_2248
11819-97:
MS7_2233
6850:
RSAU_002048
71193:
ST398NM01_2266
ECT-R 2:
ECTR2_2066
ED133:
SAOV_2250
ED98:
SAAV_2266
HO 5096 0412:
SAEMRSA15_21120
JH1:
SaurJH1_2274
JH9:
SaurJH9_2235
JKD6008:
SAA6008_02246
JKD6159:
SAA6159_02117
LGA251:
SARLGA251_19990
M013:
M013TW_2172
MRSA252:
SAR2295
MSHR1132:
SAMSHR1132_20360
MSSA476:
SAS2104
Mu3:
SAHV_2189
Mu50:
SAV2205
MW2:
MW2130
RF122:
SAB2085
ST398:
SAPIG2266
T0131:
SAT0131_02381
TCH60:
HMPREF0772_10986
TW20:
SATW20_23430
USA300_TCH1516:
USA300HOU_2200
VC40:
SAVC_09915

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTVDGYHTVPYTISVDGITALH
  N315            MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKELTMDGKHTVPYTISVDGITALH
  NCTC8325        MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTVDGYHTVPYTISVDGITALH
  Newman          MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTVDGYHTVPYTISVDGITALH
  USA300_FPR3757  MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTVDGYHTVPYTISVDGITALH
                  **************************************:*:** ****************
  
  COL             RTYFIFPENKNVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKK
  N315            RTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKK
  NCTC8325        RTYFIFPENKNVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKK
  Newman          RTYFIFPENKNVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKK
  USA300_FPR3757  RTYFIFPENKNVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKK
                  ****:*****:*************************************************
  
  COL             NDDAKNSIDPSTIKQIQIVVK
  N315            NDDAKNSIDPSTIKQIQIVVK
  NCTC8325        NDDAKNSIDPSTIKQIQIVVK
  Newman          NDDAKNSIDPSTIKQIQIVVK
  USA300_FPR3757  NDDAKNSIDPSTIKQIQIVVK
                  *********************