PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005650000
• symbol^?: —
• synonym:
• description^?: pseudogene
• strand^?: -
• coordinates^?: 5779620..5781809
• synteny block^?: BlockID0044000
• occurrence^?: in 27% of 33 strains

⊟Orthologs

COL:
SACOL2205
N315:
—
NCTC8325:
SAOUHSC_02476
Newman:
NWMN_2118
USA300_FPR3757:
SAUSA300_2170
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_02253
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02388 (purH)
TCH60:
—
TW20:
SATW20_23490
USA300_TCH1516:
USA300HOU_2207
VC40:
SAVC_09950

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  NCTC8325        MRGDQRTQGEKSRKEGGKIFGSGSRAPIAISILVKDGSYNHDIYYNDIGEYLTREQKLDT
  Newman          MRGDQRTQGEKSRKEGGKIFGSGSRAPIAISILVKDGSYNHDIYYNDIGEYLTREQKLDT
                  ************************************************************
  
  NCTC8325        LMKHQSIVNLKSLNVLPDKNNDWINQRDINYENYLPMYDSKDIENSIYLDQFNGVNSARD
  Newman          LMKHQSIVNLKSLNVLPDKNNDWINQRDINYENYLPMYDSKDIENSIYLDQFNGVNSARD
                  ************************************************************
  
  NCTC8325        NWVTNFSNEKALVNAKLLVDNYNSEIDRLIDILDSRERINLVNKDETFISWTRGLTQKFS
  Newman          NWVTNFSNEKALVNAKLLVDNYNSEIDRLIDILDSRERINLVNKDETFISWTRGLTQKFS
                  ************************************************************
  
  NCTC8325        KGKNISINPERIVKFMHRPFTKKWIVYDKNIMEMPSRYYNIMENTGQVIYIQGQGMNKEF
  Newman          KGKNISINPERIVKFMHRPFTKKWIVYDKNIMEMPSRYYNIMENTGQVIYIQGQGMNKEF
                  ************************************************************
  
  NCTC8325        SAMITDILPNFQFIGNGKGFATYKGKDSLRLVDNISNSFKKKINLNSEEIVYYIYAILHH
  Newman          SAMITDILPNFQFIGNGKGFATYKGKDSLRLVDNISNSFKKKINLNSEEIVYYIYAILHH
                  ************************************************************
  
  NCTC8325        KYYVNKYSSDLSKGFPRIPILKDVYGFVEIGRELVELHLNYEKQLNWDGVEIIYNNMNPN
  Newman          KYYVNKYSSDLSKGFPRIPILKDVYGFVEIGRELVELHLNYEKQLNWDGVEIIYNNMNPN
                  ************************************************************
  
  NCTC8325        YKVEK
  Newman          YKVEK
                  *****