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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_2170
- pan locus tag?: SAUPAN005650000
- symbol: SAUSA300_2170
- pan gene symbol?: —
- synonym:
- product:
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: pseudogene
- locus tag: SAUSA300_2170
- symbol: SAUSA300_2170
- product:
- replicon: chromosome
- strand: -
- coordinates: 2350609..2352231
- length: 1623
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3914813 NCBI
- RefSeq:
- BioCyc:
- MicrobesOnline: 1293685 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1021
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1381
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1561
1621ATGAATATGAAAAATTAAATGCAAAAATAGCAAATACCTATGCAAATTTTTCAACAGCAA
ATTTAAAAAAATCATTATATGATTCGTATATACAGGCTTTTCGATGGGCAACTGATAGAG
TTGGAAAAAAGGTATTATAGGATTTGTAACAAATGGATCATTTATTGATAGTCAAAGCAC
TGATGGATTTAGAAAAGTTTTATACGATGAATTTAACTATCTGTACATAATTAATTTGAG
AGGCGACCAACGAACACAGGGTGAAAAATCAAGAAAAGAAGGTGGAAAAATATTTGGATC
AGGAAGTAGAGCACCGATAGCTATATCTATTTTAGTTAAAGATGGAAGTTACAATCACGA
TATCTATTATAATGACATTGGTGAATATTTAACTAGAGAGCAAAAATTAGATACTTTAAT
GAAACATCAATCAATTGTGAATTTGAAAAGTTTGAATGTTTTACCCGATAAAAACAATGA
TTGGATTAATCAACGAGACATAAACTATGAGAATTATTTACCAATGTATGATTCCAAGGA
TATTGAAAATTCTATATATTTAGATCAATTTAATGGAGTAAATTCAGCAAGAGATAATTG
GGTAACAAATTTTTCGAATGAAAAAGCATTAGTAAATGCAAAATTACTTGTAGATAACTA
TAATTCTGAAATAGATAGATTAATTGATATCTTAGATTCAAGAGAACGTATAAATTTAGT
GAACAAAGATGAAACATTTATTAGTTGGACACGAGGACTTACCCAAAAATTTTCTAAAGG
AAAAAATATTTCAATTAATCCAGAGAGAATTGTTAAATTTATGCATAGACCATTTACAAA
AAAATGGATAGTGTACGACAAAAATATTATGGAAATGCCAAGTAGATATTATAATATAAT
GGAGAATACTGGACAGGTGATTTATATACAAGGACAGGGAATGAATAAAGAATTCTCGGC
TATGATCACGGACATATTACCTAATTTCCAATTTATTGGTAATGGCAAAGGCTTTGCTAC
ATACAAAGGTAAAGATAGTTTGAGGCTTGTAGATAATATTTCTAATTCTTTTAAAAAGAA
AATAAATCTTAATTCAGAAGAGATAGTATATTATATATATGCAATTTTGCATCATAAATA
TTATGTGAACAAATATTCAAGTGATTTGAGTAAAGGTTTTCCGCGAATACCGATATTAAA
GGATGTATATGGATTTGTTGAAATTGGTAGGGAGTTAGTGGAATTACATTTAAATTATGA
AAAACAACTCAATTGGGATGGTGTAGAAATAATTTATAATAATATGAATCCGAATTATAA
AGTTGAAAAATGAAGCACCCTAAAAAGGGCGTGTTGGATACAGTAATATACAATACCGAT
ATTACAGTTACTAACATTCCAAATAAAGTATATAATTATATTGTGAATGGCAAGCCTGCT
ATTGAATGGATTATAGATCAGTACAACGTAAGCATCGACAAGAAATCTGGAATATTAGAT
GATCCTAATGAATTTAGTGAAGATCCGAATTACATTTTAAATCTGCTTTTATCAGTTATT
ACTGTAAGTATGAAAACTCTTGGATTAATAGATAAATTACCAGATTTTGAAGTATTAGAT
TAA60
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1623
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_2170
- symbol: SAUSA300_2170
- description:
- length:
- theoretical pI:
- theoretical MW:
- GRAVY:
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for NCTC8325
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb:
- LocateP:
- SignalP:
- predicted transmembrane helices (TMHMM):
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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