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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005790000
- symbol?: —
- synonym:
- description?: YafY family transcriptional regulator
- YafY family transcriptional regulator
- DeoR family regulatory protein
- transcriptional regulator, putative
- DeoR family transcriptional regulator
- deoR-like helix-turn-helix domain protein
- helix-turn-helix, type 11 domain-containing protein
- helix-turn-helix domain-containing protein
- HTH domain family
- regulatory protein DeoR family
- transcriptional regulator
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5878055..5878756
- synteny block?: BlockID0045350
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2251
08BA02176:
C248_2354
11819-97:
MS7_2329
6850:
RSAU_002150
71193:
ST398NM01_2363
ECT-R 2:
ECTR2_2171
ED133:
SAOV_2352
ED98:
SAAV_2374
HO 5096 0412:
SAEMRSA15_22100
JH1:
SaurJH1_2379
JH9:
SaurJH9_2336
JKD6008:
SAA6008_02347
JKD6159:
SAA6159_02216
LGA251:
SARLGA251_20950
M013:
M013TW_2269
MRSA252:
SAR2396
MSHR1132:
SAMSHR1132_21370
MSSA476:
SAS2204
Mu3:
SAHV_2296
Mu50:
SAV2312
MW2:
MW2232
RF122:
SAB2189
ST398:
SAPIG2363
T0131:
SAT0131_02492
TCH60:
HMPREF0772_10883
TW20:
SATW20_24430
USA300_TCH1516:
USA300HOU_2294
VC40:
SAVC_10420
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNKAERQNLIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGY
N315 MNKAERQNLIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGY
NCTC8325 MNKAERQNLIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGY
Newman MNKAERQNLIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGY
USA300_FPR3757 MNKAERQNLIITAIQQNKKMTALELAKYCNVSKRTILRDIDDLENQGVKIYAHYGKNGGY
************************************************************
COL QIQQAQSKIALNLSETQLSALFLVLNESQSYSTLPYKSEINAIIKQCLSLPQTRLRKLLK
N315 QIQQAQSKIALNLSETQLSALFLVLNESQSYSTLPYKSEINAIIKQCLSLPQTRLRKLLK
NCTC8325 QIQQAQSKIALNLSETQLSALFLVLNESQSYSTLPYKSEINAIIKQCLSLPQTRLRKLLK
Newman QIQQAQSKIALNLSETQLSALFLVLNESQSYSTLPYKSEINAIIKQCLSLPQTRLRKLLK
USA300_FPR3757 QIQQAQSKIALNLSETQLSALFLVLNESQSYSTLPYKSEINAIIKQCLSLPQTRLRKLLK
************************************************************
COL RMDFYIKFDDTQHMTLPMLFSDILIYCTERNVMLVDHRVDDNIKAENVIFIGLLCKHGHW
N315 RMDFYIKFDDTQHMTLPMLFSDILIYCTERNVMLVDHRVDDNIKAENVIFIGLLCKHGHW
NCTC8325 RMDFYIKFDDTQHMTLPMLFSDILIYCTERNVMLVDHRVDDNIKAENVIFIGLLCKHGHW
Newman RMDFYIKFDDTQHMTLPMLFSDILIYCTERNVMLVDHRVDDNIKAENVIFIGLLCKHGHW
USA300_FPR3757 RMDFYIKFDDTQHMTLPMLFSDILIYCTERNVMLVDHRVDDNIKAENVIFIGLLCKHGHW
************************************************************
COL HAVIYDIAQDKTAELEIENIIDISYSFGKTIQTRDISIDNYHQFLNPIDS
N315 HAVIYDIAQDKTAELEIENIIDISYSFGKTIQTRDISIDNYHQFLNPIDS
NCTC8325 HAVIYDIAQDKTAELEIENIIDISYSFGKTIQTRDISIDNYHQFLNPIDS
Newman HAVIYDIAQDKTAELEIENIIDISYSFGKTIQTRDISIDNYHQFLNPIDS
USA300_FPR3757 HAVIYDIAQDKTAELEIENIIDISYSFGKTIQTRDISIDNYHQFLNPIDS
**************************************************