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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005795000
- symbol?: rpiRc
- synonym:
- description?: MurR/RpiR family transcriptional regulator
- MurR/RpiR family transcriptional regulator
- RpiR family phosphosugar-binding transcriptional regulator
- phosphosugar-binding transcriptional regulator RpiR family protein
- RpiR famil transcriptional regulator, putative
- helix-turn-helix domain, rpiR family protein
- phosphosugar-binding transcriptional regulator, RpiR family
- putative transcriptional regulator
- RpiR family regulatory protein
- RpiR family transcripitonal regulator
- RpiR family transcriptional regulator
- RpiR family transcription regulator
- Sialic acid utilization regulator, RpiR family
- Transcriptional regulator, RpiR family
- transcription regulator RpiR family
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5882332..5883213
- synteny block?: BlockID0045400
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2254
08BA02176:
C248_2357
11819-97:
MS7_2332
6850:
RSAU_002152
71193:
ST398NM01_2366
ECT-R 2:
ECTR2_2174
ED133:
SAOV_2355
ED98:
SAAV_2377
HO 5096 0412:
SAEMRSA15_22130
JH1:
SaurJH1_2382
JH9:
SaurJH9_2339
JKD6008:
SAA6008_02351
JKD6159:
SAA6159_02219
LGA251:
SARLGA251_20980
M013:
M013TW_2272
MRSA252:
SAR2399
MSHR1132:
SAMSHR1132_21400
MSSA476:
SAS2208
Mu3:
SAHV_2299
Mu50:
SAV2315
MW2:
MW2236
RF122:
SAB2192
ST398:
SAPIG2366
T0131:
SAT0131_02497 (cudA)
TCH60:
HMPREF0772_10880
TW20:
SATW20_24470
USA300_TCH1516:
USA300HOU_2298
VC40:
SAVC_10440
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ---MSNVLTEIDSQYPYMTKNEKKIAKFILNSPQKVIKMRSQDLASLLDISTSSVIRFSK
N315 ---MSNVLTEIDSQYPYMTKNEKKIAKFILNSPQKVIKMRSQDLASLLDISTSSVIRFSK
NCTC8325 ---MSNVLTEIDSQYPYMTKNEKKIAKFILNSPQKVIKMRSQDLASLLDISTSSVIRFSK
Newman ---MSNVLTEIDSQYPYMTKNEKKIAKFILNSPQKVIKMRSQDLASLLDISTSSVIRFSK
USA300_FPR3757 MINMSNVLTEIDSQYPYMTKNEKKIAKFILNSPQKVIKMRSQDLASLLDISTSSVIRFSK
*********************************************************
COL KITDGGFHDLKINISKYVPKASSIYNVELMNNESTESLRTKLHTRTTRALNHANNELNDK
N315 KITDGGFHDLKINISKYVPKASSIYNVELMNNESTESLRTKLHTRTTRALNHANNELNDK
NCTC8325 KITDGGFHDLKINISKYVPKASSIYNVELMNNESTESLRTKLHTRTTRALNHANNELNDK
Newman KITDGGFHDLKINISKYVPKASSIYNVELMNNESTESLRTKLHTRTTRALNHANNELNDK
USA300_FPR3757 KITDGGFHDLKINISKYVPKASSIYNVELMNNESTESLRTKLHTRTTRALNHANNELNDK
************************************************************
COL TIDQICHCLKRSETIFIYGFGASFVVATDLYQKLSRIGLNIQLVQETHIFATLLATHNSN
N315 TIDQICHCLKRSETIFIYGFGASFVVATDLYQKLSRIGLNIQLVQETHIFATLLATHNSN
NCTC8325 TIDQICHCLKRSETIFIYGFGASFVVATDLYQKLSRIGLNIQLVQETHIFATLLATHNSN
Newman TIDQICHCLKRSETIFIYGFGASFVVATDLYQKLSRIGLNIQLVQETHIFATLLATHNSN
USA300_FPR3757 TIDQICHCLKRSETIFIYGFGASFVVATDLYQKLSRIGLNIQLVQETHIFATLLATHNSN
************************************************************
COL DSVILITNNGTQSEMQSMVKVIDDYHIPIITITSTRDNPVAQASNIVLTYGKTDENEMHM
N315 DSVILITNNGTQSEMQSMVKVIDDYHIPIITITSTRDNPVAQASNIVLTYGKTDENEMHM
NCTC8325 DSVILITNNGTQSEMQSMVKVIDDYHIPIITITSTRDNPVAQASNIVLTYGKTDENEMHM
Newman DSVILITNNGTQSEMQSMVKVIDDYHIPIITITSTRDNPVAQASNIVLTYGKTDENEMHM
USA300_FPR3757 DSVILITNNGTQSEMQSMVKVIDDYHIPIITITSTRDNPVAQASNIVLTYGKTDENEMHM
************************************************************
COL GATTSLFAQMFTIDILYYRYVALNYHASLDFITQSKMALDNYRKHLSNINFKH
N315 GATTSLFAQMFTIDILYYRYVALNYHASLDFITQSKMALDNYRKHLSNINFKH
NCTC8325 GATTSLFAQMFTIDILYYRYVALNYHASLDFITQSKMALDNYRKHLSNINFKH
Newman GATTSLFAQMFTIDILYYRYVALNYHASLDFITQSKMALDNYRKHLSNINFKH
USA300_FPR3757 GATTSLFAQMFTIDILYYRYVALNYHASLDFITQSKMALDNYRKHLSNINFKH
*****************************************************