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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005801000
- symbol?: —
- synonym:
- description?: sodium transporter
- sodium transporter
- sodium/bile acid symporter family protein
- bile acid:sodium symporter family protein
- Na -dependent transporter, putative
- sodium-dependent transporter
- BASS family bile acid:sodium (Na+) symporter
- bile acid:sodium symporter
- pseudogene
- sodium/bile acid symporter family transporter
- sodium Bile acid symporter family protein
- sodium-dependent transporter yocS
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5887002..5887871
- synteny block?: BlockID0045460
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2260
08BA02176:
C248_2363 (yocS)
11819-97:
MS7_2338
6850:
RSAU_002157
71193:
ST398NM01_2372
ECT-R 2:
ECTR2_2180
ED133:
SAOV_2361c
ED98:
SAAV_2383
HO 5096 0412:
SAEMRSA15_22190
JH1:
SaurJH1_2388
JH9:
SaurJH9_2345
JKD6008:
SAA6008_02357
JKD6159:
SAA6159_02225
LGA251:
SARLGA251_21040
M013:
M013TW_2278
MRSA252:
SAR2405
MSHR1132:
SAMSHR1132_21460
MSSA476:
SAS2214
Mu3:
SAHV_2305
Mu50:
SAV2321
MW2:
MW2242
RF122:
SAB2198c
ST398:
SAPIG2372
T0131:
SAT0131_02503
TCH60:
HMPREF0772_10874
TW20:
SATW20_24530
USA300_TCH1516:
USA300HOU_2301
VC40:
SAVC_10470
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGIVMLGMGLTITPNDFKM
N315 MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGIVMLGMGLTITPNDFKM
NCTC8325 MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGIVMLGMGLTITPNDFKM
Newman MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGIVMLGMGLTITPNDFKM
USA300_FPR3757 MFQKLSIFATKSFLVWMLVAAVIGFIFPQHVATLGKWVPYLLGIVMLGMGLTITPNDFKM
************************************************************
COL VFKAPRAVIIGVCLQFSIMPTLAFIIAKSFHLPPDIAVGVILVGCCPGGTSSNVMSYLAK
N315 VFKAPRAVIIGVCLQFSIMPTLAFIIAKSFHLPPDIAVGVILVGCCPGGTSSNVMSYLAK
NCTC8325 VFKAPRAVIIGVCLQFSIMPTLAFIIAKSFHLPPDIAVGVILVGCCPGGTSSNVMSYLAK
Newman VFKAPRAVIIGVCLQFSIMPTLAFIIAKSFHLPPDIAVGVILVGCCPGGTSSNVMSYLAK
USA300_FPR3757 VFKAPRAVIIGVCLQFSIMPTLAFIIAKSFHLPPDIAVGVILVGCCPGGTSSNVMSYLAK
************************************************************
COL ANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFVSMLWSVVQVVLIPIALGIVLQI
N315 ANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFLSMLWSVVQVVLIPIALGIVLQI
NCTC8325 ANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFVSMLWSVVQVVLIPIALGIVLQI
Newman ANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFVSMLWSVVQVVLIPIALGIVLQI
USA300_FPR3757 ANVALSVSITTVSTLLAPFVTPALIYLFANEWLEVSFVSMLWSVVQVVLIPIALGIVLQI
*************************************:**********************
COL INRKIAEKASTALPIISVVAISLILAIVVGGSKHQILTTGLLIFLVVILHNVLGYTIGYW
N315 INRKIAEKASTALPIISVVAISLILAIVVGGSKHQILTTGLLIFLVVILHNVLGYTIGYW
NCTC8325 INRKIAEKASTALPIISVVAISLILAIVVGGSKHQILTTGLLIFLVVILHNVLGYTIGYW
Newman INRKIAEKASTALPIISVVAISLILAIVVGGSKHQILTTGLLIFLVVILHNVLGYTIGYW
USA300_FPR3757 INRKIAEKASTALPIISVVAISLILAIVVGGSKHQILTTGLLIFLVVILHNVLGYTIGYW
************************************************************
COL LARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFNPIAAVPGAVFSFIHNITGPILAKY
N315 LARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFNPIAAVPGAVFSFIHNITGPILAKY
NCTC8325 LARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFNPIAAVPGAVFSFIHNITGPILAKY
Newman LARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFNPIAAVPGAVFSFIHNITGPILAKY
USA300_FPR3757 LARLLKLDRQDQKAVSIEVGMQNSGLAVSLAALHFNPIAAVPGAVFSFIHNITGPILAKY
************************************************************
COL WSKKL
N315 WSKKL
NCTC8325 WSKKL
Newman WSKKL
USA300_FPR3757 WSKKL
*****