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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005922000
- symbol?: nreC
- synonym:
- description?: DNA-binding response regulator
- DNA-binding response regulator
- DegU family transcriptional regulator
- response regulator transcription factor
- transcriptional regulator DegU family protein
- transcriptional regulatory protein DegU
- two-component response regulator, putative
- oxygen regulatory protein NreC
- transcriptional regulatory protein degU (Protease production enhancerprotein)
- Two-component response regulator
- LuxR family DNA-binding response regulator
- LuxR family two component transcriptional regulator
- putative response regulator
- response regulator receiver
- response regulators of two-component regulatory
- transcriptional regulatory protein DegU, putative
- two component LuxR family transcriptional regulator
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5986888..5987490
- synteny block?: BlockID0046660
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2328
08BA02176:
C248_2438
11819-97:
MS7_2406 (nreC)
6850:
RSAU_002229
71193:
ST398NM01_2444
ECT-R 2:
ECTR2_2250
ED133:
SAOV_2437c
ED98:
SAAV_2456
HO 5096 0412:
SAEMRSA15_22900
JH1:
SaurJH1_2463
JH9:
SaurJH9_2415
JKD6008:
SAA6008_02432 (nreC)
JKD6159:
SAA6159_02292 (nreC)
LGA251:
SARLGA251_21730 (nreC)
M013:
M013TW_2352
MRSA252:
SAR2480
MSHR1132:
SAMSHR1132_22190
MSSA476:
SAS2282
Mu3:
SAHV_2375
Mu50:
SAV2391
MW2:
MW2313
RF122:
SAB2270c
ST398:
SAPIG2444
T0131:
SAT0131_02582
TCH60:
HMPREF0772_10796
TW20:
SATW20_25210 (nreC)
USA300_TCH1516:
USA300HOU_2373
VC40:
SAVC_10825
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGE
N315 MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGE
NCTC8325 -----------------MILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGE
Newman MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGE
USA300_FPR3757 MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGE
*******************************************
COL SGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYK
N315 SGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYK
NCTC8325 SGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYK
Newman SGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYK
USA300_FPR3757 SGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYK
************************************************************
COL GETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLF
N315 GETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLF
NCTC8325 GETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLF
Newman GETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLF
USA300_FPR3757 GETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLF
************************************************************
COL VSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLLEF
N315 VSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLLEF
NCTC8325 VSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLLEF
Newman VSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLLEF
USA300_FPR3757 VSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLLEF
*************************************