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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005998000
- symbol?: opuCC
- synonym:
- description?: amino acid transporter
- amino acid transporter
- glycine betaine/carnitine/choline ABC transporter
- osmoprotectant ABC transporter substrate-binding protein
- amino acid ABC transporter amino acid-binding protein
- glycine betaine/carnitine/choline ABC transporter, lipoprotein precursor, putative
- glycine betaine/carnitine/choline ABC transporter opuCC
- OsmotiCALL import_20_25_26_pangenomey activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC
- amino acid ABC transporter substrate-binding protein
- betaine-carnitine-choline ABC transporter
- glycine betaine/carnitine/choline ABC transporter opuCC (osmoprotec)
- glycine betaine/carnitine/choline-binding (Osmoprotectant-binding protein)
- glycine betaine/carnitine/choline-binding lipoprotein precursor
- glycine betaine/carnitine/choline-binding protein (Osmoprotectant-binding protein)
- glycine betaine/L-proline ABC superfamily ATP binding cassette transporter, binding protein
- glycine betaine/L-proline ABC transporter binding protein
- putative glycinebetaine/carnitine/choline-binding lipoprotein precursor
- substrate-binding region of ABC-type glycine betaine transport system
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6059967..6060908
- synteny block?: BlockID0047420
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2383 (opuCC)
08BA02176:
C248_2496 (opuCC)
11819-97:
MS7_2460 (opuCC)
6850:
RSAU_002286 (opuCC)
71193:
ST398NM01_2498
ECT-R 2:
ECTR2_2304
ED133:
SAOV_2496c
ED98:
SAAV_2512
HO 5096 0412:
SAEMRSA15_23460 (opuCC)
JH1:
SaurJH1_2521
JH9:
SaurJH9_2473
JKD6008:
SAA6008_02488 (opuCC)
JKD6159:
SAA6159_02344 (opuCC)
LGA251:
SARLGA251_22270 (opuCC)
M013:
M013TW_2409
MRSA252:
SAR2536 (opuCC)
MSHR1132:
SAMSHR1132_22740
MSSA476:
SAS2338
Mu3:
SAHV_2430 (opuCC)
Mu50:
SAV2446 (opuCC)
MW2:
MW2370 (opuCC)
RF122:
SAB2328c (opuCC)
ST398:
SAPIG2498
T0131:
SAT0131_02645 (ftsY)
TCH60:
HMPREF0772_10742 (opuCC)
TW20:
SATW20_25750 (opuCC)
USA300_TCH1516:
USA300HOU_2435 (opuBC)
VC40:
SAVC_11105
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDT
N315 MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDT
NCTC8325 MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDT
Newman MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDT
USA300_FPR3757 MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDT
************************************************************
COL HGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKNPKKAMIATQQ
N315 HGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQ
NCTC8325 HGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKNPKKAMIATQQ
Newman HGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKNPKKAMIATQQ
USA300_FPR3757 HGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKNPKKAMIATQQ
*************************************************:**********
COL GFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKG
N315 GFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKG
NCTC8325 GFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKG
Newman GFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKG
USA300_FPR3757 GFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKG
************************************************************
COL DGYEGFKKEYGFDFGTVRPMQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKDDKQF
N315 DGYEGFKKEYGFDFGTVRPMQIGLVYDALNTEKLDVALGYSTDGRIAAYDLKVLKDDKQF
NCTC8325 DGYEGFKKEYGFDFGTVRPMQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKDDKQF
Newman DGYEGFKKEYGFDFGTVRPMQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKDDKQF
USA300_FPR3757 DGYEGFKKEYGFDFGTVRPMQIGLVYDALNSEKLDVALGYSTDGRIAAYDLKVLKDDKQF
******************************:*****************************
COL FPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLK
N315 FPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLK
NCTC8325 FPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLK
Newman FPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLK
USA300_FPR3757 FPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLK
************************************************************
COL KHHYFDKQKGGHK
N315 KHHYFDKQKGGHK
NCTC8325 KHHYFDKQKGGHK
Newman KHHYFDKQKGGHK
USA300_FPR3757 KHHYFDKQKGGHK
*************