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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006225000
- symbol?: crtN
- synonym:
- description?: squalene synthase
- squalene synthase
- dehydrosqualene desaturase
- NAD(P)/FAD-dependent oxidoreductase
- Squalene/phytoene synthase
- Dehydrosqualene desaturase (Diapophytoene desaturase) (4,4-diapophytoene desaturase)
- phytoene desaturase family protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6288467..6289975
- synteny block?: BlockID0049490
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2498 (crtN)
08BA02176:
C248_2619 (crtN)
11819-97:
MS7_2568 (crtI)
6850:
RSAU_002402 (crtN)
71193:
ST398NM01_2612
ECT-R 2:
ECTR2_2414 (crtI)
ED133:
SAOV_2606c
ED98:
SAAV_2627 (crtN)
HO 5096 0412:
SAEMRSA15_24640 (crtN)
JH1:
SaurJH1_2637
JH9:
SaurJH9_2583
JKD6008:
SAA6008_02600 (crtN)
JKD6159:
SAA6159_02457 (crtN)
LGA251:
SARLGA251_23360 (crtN)
M013:
M013TW_2535
MRSA252:
SAR2642 (crtN)
MSHR1132:
—
MSSA476:
SAS2447
Mu3:
SAHV_2545 (crtN)
Mu50:
SAV2561 (crtN)
MW2:
MW2482 (crtN)
RF122:
SAB2434c (crtN)
ST398:
SAPIG2612
T0131:
SAT0131_02772
TCH60:
HMPREF0772_10628 (crtN)
TW20:
SATW20_26830 (crtN)
USA300_TCH1516:
USA300HOU_2556 (crtN)
VC40:
SAVC_11685
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGCMNQLKKDGFTFDMGPTIVMMPD
N315 MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPD
NCTC8325 MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPD
Newman MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPD
USA300_FPR3757 MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGGRMNQLKKDGFTFDMGPTIVMMPD
************************************* **********************
COL VYKDVFTACGKNYEDYIELRQLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGF
N315 VYKDVFTACGKNYEDYIELRQLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGF
NCTC8325 VYKDVFTACGKNYEDYIELRQLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGF
Newman VYKDVFTACGKNYEDYIELRQLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGF
USA300_FPR3757 VYKDVFTACGKNYEDYIELRQLRYIYDVYFDHDDRITVPTDLAELQQMLESIEPGSTHGF
************************************************************
COL MSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAKLKTLNHADQLIEHYIDNEKI
N315 MSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAKLKTLNHADQLIEHYIDNEKI
NCTC8325 MSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAKLKTLNHADQLIEHYIDNEKI
Newman MSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAKLKTLNHADQLIEHYIDNEKI
USA300_FPR3757 MSFLTDVYKKYEIARRYFLERTYRKPSDFYNMTSLVQGAKLKTLNHADQLIEHYIDNEKI
************************************************************
COL QKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
N315 QKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
NCTC8325 QKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
Newman QKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
USA300_FPR3757 QKLLAFQTLYIGIDPKRGPSLYSIIPMIEMMFGVHFIKGGMYGMAQGLAQLNKDLGVNIE
************************************************************
COL LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKI
N315 LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKI
NCTC8325 LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKI
Newman LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKI
USA300_FPR3757 LNAEIEQIIIDPKFKRADAIKVNGDIRKFDKILCTADFPSVAESLMPDFAPIKKYPPHKI
************************************************************
COL ADLDYSCSAFLMYIGIDIDVTDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAV
N315 ADLDYSCSAFLMYIGIDIDVTDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAV
NCTC8325 ADLDYSCSAFLMYIGIDIDVTDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAV
Newman ADLDYSCSAFLMYIGIDIDVTDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAV
USA300_FPR3757 ADLDYSCSAFLMYIGIDIDVTDQVRLHNVIFSDDFRGNIEEIFEGRLSYDPSIYVYVPAV
************************************************************
COL ADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIKEIIYRKLATIEVFEDIKSHI
N315 ADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIKEIIYRKLATIEVFEDIKSHI
NCTC8325 ADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIKEIIYRKLATIEVFEDIKSHI
Newman ADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIKEIIYRKLATIEVFEDIKSHI
USA300_FPR3757 ADKSLAPEGKTGIYVLMPTPELKTGSGIDWSDEALTQQIKEIIYRKLATIEVFEDIKSHI
************************************************************
COL VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
N315 VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
NCTC8325 VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
Newman VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
USA300_FPR3757 VSETIFTPNDFEQTYHAKFGSAFGLMPTLAQSNYYRPQNVSRDYKDLYFAGASTHPGAGV
************************************************************
COL PIVLTSAKITVDEMIKDIERGV
N315 PIVLTSAKITVDEMIKDIERGV
NCTC8325 PIVLTSAKITVDEMIKDIERGV
Newman PIVLTSAKITVDEMIKDIERGV
USA300_FPR3757 PIVLTSAKITVDEMIKDIERGV
**********************