PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006228000
• symbol^?: crtP
• synonym:
• description^?: diapolycopene oxygenase

  descriptions from strain specific annotations:

  • diapolycopene oxygenase
  • phytoene dehydrogenase
  • NAD(P)/FAD-dependent oxidoreductase
  • phytoene dehydrogenase, putative
  • 4,4'-diaponeurosporene oxidase
  • phytoene dehydrogenase related protein
  • Phytoene desaturase, neurosporene or lycopene producing / 4,4-diapolycopene oxidase
  • phytoene desaturase family protein
  • putative phytoene dehydrogenase related protein
  • zeta-phytoene desaturase
• strand^?: -
• coordinates^?: 6292020..6293513
• synteny block^?: BlockID0049520
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL2579
N315:
SA2351
NCTC8325:
SAOUHSC_02881
Newman:
NWMN_2464 (crtI)
USA300_FPR3757:
SAUSA300_2501
04-02981:
SA2981_2501
08BA02176:
C248_2622
11819-97:
MS7_2571 (crtP)
6850:
RSAU_002405
71193:
ST398NM01_2615
ECT-R 2:
ECTR2_2417 (crtI)
ED133:
SAOV_2609c
ED98:
SAAV_2630
HO 5096 0412:
SAEMRSA15_24670
JH1:
SaurJH1_2640
JH9:
SaurJH9_2586
JKD6008:
SAA6008_02603 (crtI)
JKD6159:
SAA6159_02460 (crtI)
LGA251:
SARLGA251_23390
M013:
M013TW_2538
MRSA252:
SAR2646
MSHR1132:
—
MSSA476:
SAS2450
Mu3:
SAHV_2548
Mu50:
SAV2564
MW2:
MW2485
RF122:
SAB2437c
ST398:
SAPIG2615
T0131:
SAT0131_02775
TCH60:
HMPREF0772_10625 (crtI)
TW20:
SATW20_26860
USA300_TCH1516:
USA300HOU_2559
VC40:
SAVC_11700

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTKHIIVIGGGLGGISAAIRMAQSGYSVSLYEQNNHIGGKVNRHESDGFGFDLGPSILTM
  N315            MTKHIIVIGGGLGGISAAIRMAQSGYSVSLYEQNTHIGGKVNRHESDGFGFDLGPSILTM
  NCTC8325        MTKHIIVIGGGLGGISAAIRMAQSGYSVSLYEQNNHIGGKVNRHESDGFGFDLGPSILTM
  Newman          MTKHIIVIGGGLGGISAAIRMAQSGYSVSLYEQNNHIGGKVNRHESDGFGFDLGPSILTM
  USA300_FPR3757  MTKHIIVIGGGLGGISAAIRMAQSGYSVSLYEQNNHIGGKVNRHESDGFGFDLGPSILTM
                  **********************************.*************************
  
  COL             PYIFEKLFEYSKKQMSDYVTIKRLPHQWRSFFPDGTTIDLYEGIKETGQHNAILSKQDIE
  N315            PYIFEKLFEYSKKQMSDYVTIKRLPHQWRSFFPDGTTIDLYEGIKETGQHNAILSKQDIE
  NCTC8325        PYIFEKLFEYSKKQMSDYVTIKRLPHQWRSFFPDGTTIDLYEGIKETGQHNAILSKQDIE
  Newman          PYIFEKLFEYSKKQMSDYVTIKRLPHQWRSFFPDGTTIDLYEGIKETGQHNAILSKQDIE
  USA300_FPR3757  PYIFEKLFEYSKKQMSDYVTIKRLPHQWRSFFPDGTTIDLYEGIKETGQHNAILSKQDIE
                  ************************************************************
  
  COL             ELQNYLNYTRRIDRITEKGYFNYGLDTLSQIIKFHGPLNALINYDYVHTMQQAIDKRISN
  N315            ELQNYLNYTRRIDRITEKGYFNYGLDTLSQIIKFHGPLNALINYDYVHTMQQAIDKRISN
  NCTC8325        ELQNYLNYTRRIDRITEKGYFNYGLDTLSQIIKFHGPLNALINYDYVHTMQQAIDKRISN
  Newman          ELQNYLNYTRRIDRITEKGYFNYGLDTLSQIIKFHGPLNALINYDYVHTMQQAIDKRISN
  USA300_FPR3757  ELQNYLNYTRRIDRITEKGYFNYGLDTLSQIIKFHGPLNALINYDYVHTMQQAIDKRISN
                  ************************************************************
  
  COL             PYLRQMLGYFIKYVGSSSYDAPAVLSMLFHMQQEQGLWYVEGGIHHLANALEKLAREEGV
  N315            PYLRQMLGYFIKYVGSSSYDAPAVLSMLFHMQQEQGLWYVEGGIHHLANALEKLAREEGV
  NCTC8325        PYLRQMLGYFIKYVGSSSYDAPAVLSMLFHMQQEQGLWYVEGGIHHLANALEKLAREEGV
  Newman          PYLRQMLGYFIKYVGSSSYDAPAVLSMLFHMQQEQGLWYVEGGIHHLANALEKLAREEGV
  USA300_FPR3757  PYLRQMLGYFIKYVGSSSYDAPAVLSMLFHMQQEQGLWYVEGGIHHLANALEKLAREEGV
                  ************************************************************
  
  COL             TIHTGARVDNIKTYQRRVTGVRLDTGEFVKADYIISNMEVIPTYKYLIHLDTQRLNKLER
  N315            TIHTGARVDNIKTYQRRVTGVRLDTGEFVKADYIISNMEVIPTYKYLIHLDTQRLNKLER
  NCTC8325        TIHTGARVDNIKTYQRRVTGVRLDTGEFVKADYIISNMEVIPTYKYLIHLDTQRLNKLER
  Newman          TIHTGARVDNIKTYQRRVTGVRLDTGEFVKADYIISNMEVIPTYKYLIHLDTQRLNKLER
  USA300_FPR3757  TIHTGARVDNIKTYQRRVTGVRLDTGEFVKADYIISNMEVIPTYKYLIHLDTQRLNKLER
                  ************************************************************
  
  COL             EFEPASSGYVMHLGVACQYPQLAHHNFFFTENAYLNYQQVFHEKVLPDDPTIYLVNTNKT
  N315            EFEPASSGYVMHLGVACQYPQLAHHNFFFTENAYLNYQQVFHEKVLPDDPTIYLVNTNKT
  NCTC8325        EFEPASSGYVMHLGVACQYPQLAHHNFFFTENAYLNYQQVFHEKVLPDDPTIYLVNTNKT
  Newman          EFEPASSGYVMHLGVACQYPQLAHHNFFFTENAYLNYQQVFHEKVLPDDPTIYLVNTNKT
  USA300_FPR3757  EFEPASSGYVMHLGVACQYPQLAHHNFFFTENAYLNYQQVFHEKVLPDDPTIYLVNTNKT
                  ************************************************************
  
  COL             DHTQAPVGYENIKVLPHIPYIQDQPFTTEDYAKFRDKILDKLEKMGLTDLRKHIIYEDVW
  N315            DHTQAPVGYENIKVLPHIPYIQDQPFTTEDYAKFRDKILDKLEKMGLTDLRKHIIYEDVW
  NCTC8325        DHTQAPVGYENIKVLPHIPYIQDQPFTTEDYAKFRDKILDKLEKMGLTDLRKHIIYEDVW
  Newman          DHTQAPVGYENIKVLPHIPYIQDQPFTTEDYAKFRDKILDKLEKMGLTDLRKHIIYEDVW
  USA300_FPR3757  DHTQAPVGYENIKVLPHIPYIQDQPFTTEDYAKFRDKILDKLEKMGLTDLRKHIIYEDVW
                  ************************************************************
  
  COL             TPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVTLS
  N315            TPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVTLS
  NCTC8325        TPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVTLS
  Newman          TPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVTLS
  USA300_FPR3757  TPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVTLS
                  ************************************************************
  
  COL             GQQVADKINAREAKNRK
  N315            GQQVADKINAREAKNRK
  NCTC8325        GQQVADKINAREAKNRK
  Newman          GQQVADKINAREAKNRK
  USA300_FPR3757  GQQVADKINAREAKNRK
                  *****************