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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006252000
- symbol?: gbaA
- synonym:
- description?: TetR family transcriptional regulator
- TetR family transcriptional regulator
- TetR/AcrR family transcriptional regulator
- TetR family regulatory protein
- transcriptional regulator TetR family protein
- bacterial regulatory s, tetR family protein
- HTH-type transcriptional regulator
- regulatory proteins, tetR family protein
- Transcriptional regulator, TetR family
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 6309428..6310020
- synteny block?: BlockID0049750
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2516 (acrR)
08BA02176:
C248_2636
11819-97:
MS7_2584
6850:
RSAU_002418
71193:
ST398NM01_2628
ECT-R 2:
ECTR2_2432
ED133:
SAOV_2622
ED98:
SAAV_2644
HO 5096 0412:
SAEMRSA15_24800
JH1:
SaurJH1_2654
JH9:
SaurJH9_2600
JKD6008:
SAA6008_02616
JKD6159:
SAA6159_02475
LGA251:
SARLGA251_23520
M013:
M013TW_2552
MRSA252:
SAR2658
MSHR1132:
SAMSHR1132_23930
MSSA476:
SAS2464
Mu3:
SAHV_2562
Mu50:
SAV2578
MW2:
MW2498
RF122:
SAB2452
ST398:
SAPIG2628
T0131:
SAT0131_02789
TCH60:
HMPREF0772_10613
TW20:
SATW20_26980
USA300_TCH1516:
USA300HOU_2572
VC40:
SAVC_11765
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRKDAKENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQ
N315 MRKDAKENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQ
NCTC8325 MRKDAKENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQ
Newman MRKDAKENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQ
USA300_FPR3757 MRKDAKENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQ
************************************************************
COL RDLDIFITHFKQIKDDYHSNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAFY
N315 RDLDIFITHFKQIKDDYHSNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAFY
NCTC8325 RDLDIFITHFKQIKDDYHSNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAFY
Newman RDLDIFITHFKQIKDDYHSNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAFY
USA300_FPR3757 RDLDIFITHFKQIKDDYHSNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAFY
************************************************************
COL QELFDFYYDLFKSDDDTYTKFKTDMLLQSLSTSVFAFQIEHRHISIEAYRNYLLNIYLDE
N315 QELFDFYYDLFKSDDDTYTKFKTDMLLQSLSTSVFAFQIEHRHISIEAYRNYLLNIYLDE
NCTC8325 QELFDFYYDLFKSDDDTYTKFKTDMLLQSLSTSVFAFQIEHRHISIEAYRNYLLNIYLDE
Newman QELFDFYYDLFKSDDDTYTKFKTDMLLQSLSTSVFAFQIEHRHISIEAYRNYLLNIYLDE
USA300_FPR3757 QELFDFYYDLFKSDDDTYTKFKTDMLLQSLSTSVFAFQIEHRHISIEAYRNYLLNIYLDE
************************************************************
COL VGRND
N315 VERND
NCTC8325 VGRND
Newman VGRND
USA300_FPR3757 VGRND
* ***