PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006275000
• symbol^?: —
• synonym:
• description^?: TetR/AcrR family transcriptional regulator

  descriptions from strain specific annotations:

  • TetR/AcrR family transcriptional regulator
  • TetR family transcriptional regulator
  • TetR family transcriptional regulator, putative
  • transcriptional regulator TetR family protein
  • bacterial regulatory s, tetR family protein
  • DNA-binding protein
  • putative DNA-binding protein
  • putative TetR-family transcriptional regulator
  • TetR family regulatory protein
  • Transcriptional regulator, TetR family
  • transcriptional regulators, AcrR family
• strand^?: -
• coordinates^?: 6325909..6326496
• synteny block^?: BlockID0049980
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2610
N315:
SA2379
NCTC8325:
SAOUHSC_02913
Newman:
NWMN_2492
USA300_FPR3757:
SAUSA300_2530
04-02981:
SA2981_2531
08BA02176:
C248_2654
11819-97:
MS7_2599
6850:
RSAU_002434
71193:
ST398NM01_2643
ECT-R 2:
ECTR2_2447
ED133:
SAOV_2638c
ED98:
SAAV_2659
HO 5096 0412:
SAEMRSA15_24960
JH1:
SaurJH1_2669
JH9:
SaurJH9_2615
JKD6008:
SAA6008_02652
JKD6159:
SAA6159_02490
LGA251:
SARLGA251_23670
M013:
M013TW_2567
MRSA252:
SAR2673
MSHR1132:
SAMSHR1132_24090
MSSA476:
SAS2479
Mu3:
SAHV_2577
Mu50:
SAV2593
MW2:
MW2513
RF122:
SAB2468c
ST398:
SAPIG2643
T0131:
SAT0131_02827
TCH60:
HMPREF0772_10598
TW20:
SATW20_27340
USA300_TCH1516:
USA300HOU_2588
VC40:
SAVC_11845

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTIDRRIRKSQVAMRNAFIELLHQHQLEEITVQQIADLADVNRSTFYTHYYDKYDLLEKL
  N315            MTIDRRIRKSQVAMRNAFIELLHQHQLEEITVQQIADLADVNRSTFYTHYYDKYDLLEKL
  NCTC8325        MTIDRRIRKSQVAMRNAFIELLHQHQLEEITVQQIADLADVNRSTFYTHYYDKYDLLEKL
  Newman          MTIDRRIRKSQVAMRNAFIELLHQHQLEEITVQQIADLADVNRSTFYTHYYDKYDLLEKL
  USA300_FPR3757  MTIDRRIRKSQVAMRNAFIELLHQHQLEEITVQQIADLADVNRSTFYTHYYDKYDLLEKL
                  ************************************************************
  
  COL             EDQQLEEIRDFIHDEKLNGAVKLSTDNIHQIMTVLIEMIEKDIAFYQLMFRMGKDSNIHE
  N315            EDQQLEEIRDFIHDEKLNGAVKLSTDNIHQIMTVLIDMIEKDIAFYQLMFRMGKDSNIHE
  NCTC8325        EDQQLEEIRDFIHDEKLNGAVKLSTDNIHQIMTVLIEMIEKDIAFYQLMFRMGKDSNIHE
  Newman          EDQQLEEIRDFIHDEKLNGAVKLSTDNIHQIMTVLIEMIEKDIAFYQLMFRMGKDSNIHE
  USA300_FPR3757  EDQQLEEIRDFIHDEKLNGAVKLSTDNIHQIMTVLIEMIEKDIAFYQLMFRMGKDSNIHE
                  ************************************:***********************
  
  COL             KLYDLIMCHLQRYKNENDQINGIPFSYFMSYVSGAGLSFIRHWVEDPNRIDKVDLIRHFN
  N315            KLYDLIMCHLQRYKNENDQINGIPFSYFMSYVSGAGLSLIRHWVEDPNRIDKVDLIMHFN
  NCTC8325        KLYDLIMCHLQRYKNENDQINGIPFSYFMSYVSGAGLSFIRHWVEDPNRIDKVDLIRHFN
  Newman          KLYDLIMCHLQRYKNENDQINGIPFSYFMSYVSGAGLSFIRHWVEDPNRIDKVDLIRHFN
  USA300_FPR3757  KLYDLIMCHLQRYKNENDQINGIPFSYFMSYVSGAGLSFIRHWVEDPNRIDKVDLIRHFN
                  **************************************:***************** ***
  
  COL             TIVNQGPATIIKNIQ
  N315            TIVNQGPATIIKNIQ
  NCTC8325        TIVNQGPATIIKNIQ
  Newman          TIVNQGPATIIKNIQ
  USA300_FPR3757  TIVNQGPATIIKNIQ
                  ***************