PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006281000
• symbol^?: panD
• synonym:
• description^?: aspartate 1-decarboxylase

  descriptions from strain specific annotations:

  • aspartate 1-decarboxylase
  • aspartate alpha-decarboxylase
  • aspartate alpha-decarboxylase PanD
  • Aspartate 1-decarboxylase alpha chain
  • low molecular weight phosphotyrosine protein phosphatase
• strand^?: -
• coordinates^?: 6328474..6340539
• synteny block^?: BlockID0050040
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2613 (panD)
N315:
SA2390 (panD)
NCTC8325:
SAOUHSC_02916
Newman:
NWMN_2494 (panD)
USA300_FPR3757:
SAUSA300_2532 (panD)
04-02981:
SA2981_2535 (panD)
08BA02176:
C248_2656 (panD)
11819-97:
MS7_2602 (panD)
6850:
RSAU_002438 (panD)
71193:
ST398NM01_2645
ECT-R 2:
ECTR2_2451 (panD)
ED133:
SAOV_2641c
ED98:
SAAV_2663 (panD)
HO 5096 0412:
SAEMRSA15_25000 (panD)
JH1:
SaurJH1_2673
JH9:
SaurJH9_2619
JKD6008:
SAA6008_02654 (panD)
JKD6159:
SAA6159_02493 (panD)
LGA251:
SARLGA251_23700 (panD)
M013:
M013TW_2574
MRSA252:
SAR2675 (panD)
MSHR1132:
SAMSHR1132_24120
MSSA476:
SAS2482
Mu3:
SAHV_2581 (panD)
Mu50:
SAV2597 (panD)
MW2:
MW2516 (panD)
RF122:
SAB2470c (panD)
ST398:
SAPIG2645 (panD)
T0131:
SAT0131_02829 (sbcD)
TCH60:
HMPREF0772_10595 (panD)
TW20:
SATW20_27360 (panD)
USA300_TCH1516:
USA300HOU_2591 (panD)
VC40:
SAVC_11855

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MIRTMMNAKIHRARVTESNLNYVGSITIDSDILEAVDILPNEKVAIVNNNNGARFETYVI
  N315            ----MMNAKIHRARVTESNLNYVGSITIDSDILEAVDILPNEKVAIVNNNNGARFETYVI
  NCTC8325        ----MMNAKIHRARVTESNLNYVGSITIDSDILEAVDILPNEKVAIVNNNNGARFETYVI
  Newman          MIRTMMNAKIHRARVTESNLNYVGSITIDSDILEAVDILPNEKVAIVNNNNGARFETYVI
  USA300_FPR3757  ----MMNAKIHRARVTESNLNYVGSITIDSDILEAVDILPNEKVAIVNNNNGARFETYVI
                      ********************************************************
  
  COL             AGERGSGKICLNGAASRLVEVGDVVIIMTYAQLNEEEIKNHAPKVAVMNEDNVIIEMIHE
  N315            AGERGSGKICLNGAASRLVEVGDVVIIMTYAQLNEEEIKNHAPKVAVMNEDNVIIEMIHE
  NCTC8325        AGERGSGKICLNGAASRLVEVGDVVIIMTYAQLNEEEIKNHAPKVAVMNEDNVIIEMIHE
  Newman          AGERGSGKICLNGAASRLVEVGDVVIIMTYAQLNEEEIKNHAPKVAVMNEDNVIIEMIHE
  USA300_FPR3757  AGERGSGKICLNGAASRLVEVGDVVIIMTYAQLNEEEIKNHAPKVAVMNEDNVIIEMIHE
                  ************************************************************
  
  COL             KENTIVL
  N315            KENTIVL
  NCTC8325        KENTIVL
  Newman          KENTIVL
  USA300_FPR3757  KENTIVL
                  *******