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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006313000
- symbol?: betA
- synonym:
- description?: choline dehydrogenase
- choline dehydrogenase
- oxygen-dependent choline dehydrogenase
- choline dehydrogenase CDH
- putative choline dehydrogenase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6356670..6358379
- synteny block?: BlockID0050290
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2550 (betA)
08BA02176:
C248_2671 (cudB)
11819-97:
MS7_2616 (betA)
6850:
RSAU_002452 (cdh)
71193:
ST398NM01_2659
ECT-R 2:
ECTR2_2465 (betA)
ED133:
SAOV_2657c
ED98:
SAAV_2678 (betA)
HO 5096 0412:
SAEMRSA15_25160 (cudB)
JH1:
SaurJH1_2688
JH9:
SaurJH9_2634
JKD6008:
SAA6008_02669 (betA)
JKD6159:
SAA6159_02508 (betA)
LGA251:
SARLGA251_23840 (cudB)
M013:
M013TW_2589
MRSA252:
SAR2690 (cudB)
MSHR1132:
SAMSHR1132_24270
MSSA476:
SAS2497
Mu3:
SAHV_2596 (betA)
Mu50:
SAV2612 (betA)
MW2:
MW2531 (betA)
RF122:
SAB2486c (cudB)
ST398:
SAPIG2659 (betA)
T0131:
SAT0131_02845
TCH60:
HMPREF0772_10579 (betA)
TW20:
SATW20_27500 (cudB)
USA300_TCH1516:
USA300HOU_2605 (betA)
VC40:
SAVC_11920
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPS
N315 MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPS
NCTC8325 MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPS
Newman MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPS
USA300_FPR3757 MSNKNKSYDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPS
************************************************************
COL GNKFYDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMET
N315 GNKFYDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMET
NCTC8325 GNKFYDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMET
Newman GNKFYDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMET
USA300_FPR3757 GNKFYDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMET
************************************************************
COL WDFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTP
N315 WDFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTP
NCTC8325 WDFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTP
Newman WDFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTP
USA300_FPR3757 WDFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTP
************************************************************
COL DVNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYEGRRATGV
N315 DVNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYEGRRATGV
NCTC8325 DVNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYEGRRATGV
Newman DVNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYEGRRATGV
USA300_FPR3757 DVNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYEGRRATGV
************************************************************
COL TYKKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRVHLPGVGENFED
N315 TYKKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRVHLPGVGENFED
NCTC8325 TYKKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRVHLPGVGENFED
Newman TYKKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRVHLPGVGENFED
USA300_FPR3757 TYKKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRVHLPGVGENFED
************************************************************
COL HLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEGGGFVRSNNEVDYP
N315 HLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEGGGFVRSNNEVDYP
NCTC8325 HLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEGGGFVRSNNEVDYP
Newman HLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEGGGFVRSNNEVDYP
USA300_FPR3757 HLEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEGGGFVRSNNEVDYP
************************************************************
COL NLMFHFLPIAVRYDGQKAAVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIRFNYLSTE
N315 NLMFHFLPIAVRYDGQKAAVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIRFNYLSTE
NCTC8325 NLMFHFLPIAVRYDGQKAAVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIRFNYLSTE
Newman NLMFHFLPIAVRYDGQKAAVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIRFNYLSTE
USA300_FPR3757 NLMFHFLPIAVRYDGQKAAVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIRFNYLSTE
************************************************************
COL EDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTDEEILDWVRRDGETALHPSCSA
N315 EDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTDEEILDWVRRDGETALHPSCSA
NCTC8325 EDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTDEEILDWVRRDGETALHPSCSA
Newman EDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTDEEILDWVRRDGETALHPSCSA
USA300_FPR3757 EDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTDEEILDWVRRDGETALHPSCSA
************************************************************
COL KMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGRK
N315 KMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGRK
NCTC8325 KMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGRK
Newman KMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGRK
USA300_FPR3757 KMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGRK
************************************************************
COL PLEPQYIDYYKHGVHDENEGAIEVKPYAK
N315 PLEPQYIDYYKHGVHDENEGAIEVKPYAK
NCTC8325 PLEPQYIDYYKHGVHDENEGAIEVKPYAK
Newman PLEPQYIDYYKHGVHDENEGAIEVKPYAK
USA300_FPR3757 PLEPQYIDYYKHGVHDENEGAIEVKPYAK
*****************************