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⊟Summary[edit | edit source]
- pan ID?: SAUPAN006410000
- symbol?: icaR
- synonym:
- description?: biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR
- biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR
- ica operon transcriptional regulator IcaR
- biofilm synthesis ica operon transcriptional regulator
- intercellular adhesion operon transcription regulator
- intercellular adhesion regulator
- TetR/AcrR family transcriptional regulator
- Biofilm operon icaABCD HTH-type negative transcriptional regulator IcaR
- biofilm operon icaABCD HTH-type negative transcriptional regulatoricaR (Intercellular adhesion protein R)
- ica operon HTH-type negative transcriptional regulator
- ica operon transcriptional regulator R
- ica operon transcription regulator
- Intercellular adhesion protein R
- putative negative transcriptional regulator IcaR
- TetR family transcriptional regulator
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 6460719..6461279
- synteny block?: BlockID0051170
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2604 (icaR)
08BA02176:
C248_2735 (icaR)
11819-97:
MS7_2670 (icaR)
6850:
RSAU_002510 (icaR)
71193:
ST398NM01_2717
ECT-R 2:
ECTR2_2519
ED133:
SAOV_2717c
ED98:
SAAV_2737 (icaR)
HO 5096 0412:
SAEMRSA15_25720 (icaR)
JH1:
SaurJH1_2746
JH9:
SaurJH9_2689
JKD6008:
SAA6008_02725 (icaR)
JKD6159:
SAA6159_02561 (icaR)
LGA251:
SARLGA251_24390 (icaR)
M013:
M013TW_2648
MRSA252:
SAR2746 (icaR)
MSHR1132:
SAMSHR1132_24930
MSSA476:
SAS2551
Mu3:
SAHV_2649 (icaR)
Mu50:
SAV2665 (icaR)
MW2:
MW2585 (icaR)
RF122:
SAB2540c (icaR)
ST398:
SAPIG2717
T0131:
SAT0131_02944 (ctpA)
TCH60:
HMPREF0772_10521 (icaR)
TW20:
SATW20_28030 (icaR)
USA300_TCH1516:
USA300HOU_2665 (icaR)
VC40:
SAVC_12205
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLN
N315 MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLN
NCTC8325 MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLN
Newman MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLN
USA300_FPR3757 MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLN
************************************************************
COL NIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQS
N315 NIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQS
NCTC8325 NIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQS
Newman NIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQS
USA300_FPR3757 NIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQS
************************************************************
COL LSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLL
N315 LSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLL
NCTC8325 LSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLL
Newman LSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLL
USA300_FPR3757 LSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLL
************************************************************
COL NIFLKK
N315 NIFLKK
NCTC8325 NIFLKK
Newman NIFLKK
USA300_FPR3757 NIFLKK
******