PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006473000
• symbol^?: —
• synonym:
• description^?: IS30 family transposase

  descriptions from strain specific annotations:

  • IS30 family transposase
  • integrase/recombinase
  • integrase
  • integrase/recombinase core subunit
  • pseudogene
  • transposase (pseudogene)
• strand^?: +
• coordinates^?: 6512031..6513046
• synteny block^?: BlockID0051800
• occurrence^?: in 27% of 33 strains

⊟Orthologs

COL:
SACOL2727
N315:
—
NCTC8325:
SAOUHSC_03040
Newman:
NWMN_2601
USA300_FPR3757:
SAUSA300_2636
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
RSAU_002549
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR2784
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
SATW20_28380
USA300_TCH1516:
USA300HOU_2706
VC40:
SAVC_12390

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLNSICISYQRKHKEFGHLEGDTIVGRRHGSAIITLVERVSKMIITLRPLGRKATDIENA
  NCTC8325        MLNSICISYQRKHKEFGHLEGDTIVGRRHGSAIITLVERVSKMIITLRPLGRKATDIENA
  Newman          MLNSICISYQRKHKEFGHLEGDTIVGRRHGSAIITLVERVSKMIITLRPLGRKATDIENA
  USA300_FPR3757  MLNSICISYQRKHKEFGHLEGDTIVGRRHGSAIITLVERVSKMIITLRPLGRKATDIENA
                  ************************************************************
  
  COL             LHSMFSSLPSHIFKSITFDCGKEFSNWKTLCNCHDISIFFADPGTPSQRGLNEHSNGILR
  NCTC8325        LHSMFSSLPSHIFKSITFDCGKEFSNWKTLCNCHDISIFFADPGTPSQRGLNEHSNGILR
  Newman          LHSMFSSLPSHIFKSITFDCGKEFSNWKTLCNCHDISIFFADPGTPSQRGLNEHSNGILR
  USA300_FPR3757  LHSMFSSLPSHIFKSITFDCGKEFSNWKTLCNCHDISIFFADPGTPSQRGLNEHSNGILR
                  ************************************************************
  
  COL             RSGLDKELDFNLVTDDHIISVAQKINHRPRKSLGYRTPLEVFMSFIEDDKLVQLNLTI
  NCTC8325        RSGLDKELDFNLVTDDHIISVAQKINHRPRKSLGYRTPLEVFMSFIEDDKLVQLNLTI
  Newman          RSGLDKELDFNLVTDDHIISVAQKINHRPRKSLGYRTPLEVFMSFIEDDKLVQLNLTI
  USA300_FPR3757  RSGLDKELDFNLVTDDHIISVAQKINHRPRKSLGYRTPLEVFMSFIEDDKLVQLNLTI
                  **********************************************************