PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006489000
• symbol^?: trmE
• synonym:
• description^?: tRNA modification GTPase TrmE

  descriptions from strain specific annotations:

  • tRNA modification GTPase TrmE
  • tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
  • tRNA modification GTPase
  • GTPase and tRNA-U34 5-formylation enzyme TrmE
  • tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase
  • tRNA modification GTPase mnmE
• strand^?: -
• coordinates^?: 6523994..6525373
• synteny block^?: BlockID0051960
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL2738 (trmE)
N315:
SA2501 (trmE)
NCTC8325:
SAOUHSC_03053 (trmE)
Newman:
NWMN_2612 (trmE)
USA300_FPR3757:
SAUSA300_2646 (trmE)
04-02981:
SA2981_2651 (trmE)
08BA02176:
C248_2777
11819-97:
MS7_2716 (trmE)
6850:
RSAU_002560 (trmE)
71193:
ST398NM01_2757
ECT-R 2:
ECTR2_2563 (trmE)
ED133:
SAOV_2753c
ED98:
SAAV_2783 (trmE)
HO 5096 0412:
SAEMRSA15_26100
JH1:
SaurJH1_2791 (trmE)
JH9:
SaurJH9_2734 (trmE)
JKD6008:
SAA6008_02773 (trmE)
JKD6159:
SAA6159_02605 (trmE)
LGA251:
SARLGA251_24760 (mnmE)
M013:
M013TW_2698
MRSA252:
SAR2798 (trmE)
MSHR1132:
SAMSHR1132_25390
MSSA476:
SAS2594 (trmE)
Mu3:
SAHV_2696 (trmE)
Mu50:
SAV2712 (trmE)
MW2:
MW2630 (trmE)
RF122:
SAB2588c (trmE)
ST398:
SAPIG2757 (trmE)
T0131:
SAT0131_02994
TCH60:
HMPREF0772_10470 (trmE)
TW20:
SATW20_28500 (mnmE)
USA300_TCH1516:
USA300HOU_2715 (trmE)
VC40:
SAVC_12450 (trmE)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPES
  N315            MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPES
  NCTC8325        MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPES
  Newman          MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPES
  USA300_FPR3757  MDLDTITSISTPMGEGAIGIVRLSGPQAVEIADKLYKGKHLLNDVPSHTINYGHIIDPES
                  ************************************************************
  
  COL             KEVIEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAF
  N315            KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAF
  NCTC8325        KEVVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAF
  Newman          KEVIEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAF
  USA300_FPR3757  KEVIEEVMVSVLRAPKTFTREDIIEINCHGGILTINRVLELTMTYGARMAEPGEFTKRAF
                  ***:********************************************************
  
  COL             LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY
  N315            LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY
  NCTC8325        LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY
  Newman          LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY
  USA300_FPR3757  LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY
                  ************************************************************
  
  COL             PEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNN
  N315            PEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNN
  NCTC8325        PEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNN
  Newman          PEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNN
  USA300_FPR3757  PEYDDVEDATTEFLLEQSKEIKQEINRLLDTGAQGKIMREGLSTVIVGKPNVGKSSMLNN
                  ************************************************************
  
  COL             LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQ
  N315            LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQ
  NCTC8325        LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQ
  Newman          LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQ
  USA300_FPR3757  LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRETEDIVEKIGVERSRKALSQ
                  ************************************************************
  
  COL             ADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQT
  N315            ADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQT
  NCTC8325        ADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQT
  Newman          ADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQT
  USA300_FPR3757  ADLILFVLNNNEALTQEDYTLYEVVKNEDVIVIVNKMDLEQNIDINEVKDMIGDTPLIQT
                  ************************************************************
  
  COL             SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVP
  N315            SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVP
  NCTC8325        SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVP
  Newman          SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVP
  USA300_FPR3757  SMLKQEGIDELEIQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAESGVP
                  ************************************************************
  
  COL             MDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK
  N315            MDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK
  NCTC8325        MDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK
  Newman          MDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK
  USA300_FPR3757  MDMVQIDLTRTWEILGEIIGETASDELIDQLFSQFCLGK
                  ***************************************