Jump to navigation
Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0066 [new locus tag: SAUSA300_RS00335 ]
- pan locus tag?: SAUPAN000815000
- symbol: argR
- pan gene symbol?: argR
- synonym:
- product: arginine repressor
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_0066 [new locus tag: SAUSA300_RS00335 ]
- symbol: argR
- product: arginine repressor
- replicon: chromosome
- strand: -
- coordinates: 74617..75063
- length: 447
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3915260 NCBI
- RefSeq: YP_492785 NCBI
- BioCyc: see SAUSA300_RS00335
- MicrobesOnline: 1291581 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421ATGAAAAAAGAAAAACGTTTAAATCTTATCTTAACTGTTATACAACAGAATCAGTTTAAT
AAAAAACAACAAATAGTGGATTACATGGCAAGACATTTTGGAGTTTACTATAGCTTGACA
ACTATTTCTCGTGACTTACAAGAATTAGAAATTTACAAAATCCCTGTTGAAAATAAAAAG
TATATTTACAAGAAAATAAATCAAACAAATCAATTAAGTGCAAAAAAACAATTAGAAATA
TTTAGTGATGAGATTATTGAATTTATAACGCTAAATAACTATGTCTTAATAAAAACATCT
CCTGGCTTTGCTCAAAGTATAAGTTATTACATAGATCAATTACAAATGAAAGAAATATTA
GGAATTATTGGAGGTAACGATACTTTGATGATTTTGACTTCTTCAAATGAAATAGCAGAA
TTTGTTTGTTATCAATTATTCCCTTAA60
120
180
240
300
360
420
447
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_0066 [new locus tag: SAUSA300_RS00335 ]
- symbol: ArgR
- description: arginine repressor
- length: 148
- theoretical pI: 8.84407
- theoretical MW: 17390.1
- GRAVY: -0.187838
⊟Function[edit | edit source]
- TIGRFAM: Amino acid biosynthesis Glutamate family arginine repressor (TIGR01529; HMM-score: 83.5)Regulatory functions DNA interactions arginine repressor (TIGR01529; HMM-score: 83.5)
- TheSEED :
- Arginine pathway regulatory protein ArgR, repressor of arg regulon
Amino Acids and Derivatives Arginine; urea cycle, polyamines Arginine and Ornithine Degradation Arginine pathway regulatory protein ArgR, repressor of arg regulonand 2 more - PFAM: no clan defined Arg_repressor_C; Arginine repressor, C-terminal domain (PF02863; HMM-score: 60.3)and 5 moreHTH (CL0123) Arg_repressor; Arginine repressor, DNA binding domain (PF01316; HMM-score: 40.3)HTH_33; Winged helix-turn helix (PF13592; HMM-score: 14)no clan defined VPS9; Vacuolar sorting protein 9 (VPS9) domain (PF02204; HMM-score: 13.5)HTH (CL0123) HTH_11; HTH domain (PF08279; HMM-score: 12.9)HTH_DeoR; DeoR-like helix-turn-helix domain (PF08220; HMM-score: 12.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.67
- Cytoplasmic Membrane Score: 0.01
- Cellwall Score: 0.15
- Extracellular Score: 0.17
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004418
- TAT(Tat/SPI): 0.000251
- LIPO(Sec/SPII): 0.000682
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKKEKRLNLILTVIQQNQFNKKQQIVDYMARHFGVYYSLTTISRDLQELEIYKIPVENKKYIYKKINQTNQLSAKKQLEIFSDEIIEFITLNNYVLIKTSPGFAQSISYYIDQLQMKEILGIIGGNDTLMILTSSNEIAEFVCYQLFP
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.