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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0078 [new locus tag: SAUSA300_RS00395 ]
- pan locus tag?: SAUPAN000827000
- symbol: copA
- pan gene symbol?: copA
- synonym:
- product: ATPase copper transport
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_0078 [new locus tag: SAUSA300_RS00395 ]
- symbol: copA
- product: ATPase copper transport
- replicon: chromosome
- strand: +
- coordinates: 86094..88118
- length: 2025
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3914796 NCBI
- RefSeq: YP_492796 NCBI
- BioCyc: see SAUSA300_RS00395
- MicrobesOnline: 1291593 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1981ATGAATCATTCCAATCAAATGCATCATGATAACCATGCCTCACATGATCATCATAGTGGC
CATGCACATCATCATGGAAATTTTAAAGTTAAGTTTTTTGTTTCATTAATTTTTGCAATA
CCTATCATTCTTTTATCGCCACTGATGGGTGTTAACTTACCTTTTCAATTCACATTTCCA
GGTTCTGAATGGGTAGTGTTAATATTAAGTACAATTTTATTCTTTTATGGTGGTAAACCG
TTCTTGTCTGGTGGTAAAGATGAAATTGCTACAAAAAAACCAGGCATGATGACCTTAGTT
GCCCTAGGTATTTCAGTAGCTTATATTTATAGCTTGTATGCTTTTTATATGAATAACTTT
AGTAGTGCAACTGGTCATACAATGGACTTTTTTTGGGAATTAGCAACCTTAATTTTAATT
ATGCTATTAGGACATTGGATAGAAATGAATGCTGTCGGAAATGCTGGAGATGCTTTAAAG
AAAATGGCAGAACTGTTACCTAATAGTGCTATTAAAGTTATGGATAATGGCCAACGCGAA
GAAGTTAAAATATCAGACATCATGACTGATGATATCGTCGAAGTAAAAGCCGGAGAAAGC
ATTCCAACAGATGGTATTATCGTTCAAGGACAAACATCTATAGATGAATCCCTAGTCACT
GGAGAATCTAAAAAAGTACAAAAAAATCAAAATGACAACGTCATCGGGGGTTCTATTAAT
GGGTCTGGAACAATACAAGTCAAGGTTACAGCTGTGGGAGAAGATGGATATCTTTCTCAA
GTTATGGGACTTGTTAATCAAGCACAAAATGATAAATCTAGTGCTGAATTGTTATCTGAT
AAAGTAGCGGGTTATTTATTCTACTTTGCTGTAAGTGTTGGCGTGATTTCTTTTATTGTC
TGGATGCTCATTCAAAATGATGTTGATTTTGCATTAGAACGTCTTGTAACTGTGTTAGTC
ATTGCTTGTCCACATGCTTTAGGCTTGGCAATACCTTTAGTCACTGCACGTTCTACTTCA
ATTGGTGCACATAATGGTTTAATTATTAAAAATAGAGAGTCTGTAGAAATAGCTCAACAT
ATCGATTATGTAATGATGGACAAAACTGGTACTTTAACTGAGGGTAACTTTTCTGTGAAT
CATTATGAGAGCTTTAAAAATGATTTGAGTAATGATACAATATTAAGCCTTTTCGCCTCA
TTAGAAAGTCAATCTAATCACCCATTAGCTATAAGTATTGTTGATTTTGCGAAAAGTAAA
AATGTTTCATTTACTAACCCACAAGACGTTAATAATATTCCAGGTGTCGGATTAGAAGGT
CTAATTGATAATAAAACATATAAAATAACAAATGTCTCTTATCTTGATAAACATAAACTT
AATTATGACGATGACTTGTTTACTAAATTAGCTCAACAAGGTAATTCAATCAGTTATTTA
ATTGAGGATCAACAAGTCATTGGCATGATTGCTCAAGGAGATCAAATTAAAGAAAGCTCA
AAACAAATGGTAGCTGATTTACTATCAAGAAATATTACACCAGTCATGCTTACAGGTGAC
AATAATGAAGTGGCACACGCTGTCGCAAAAGAATTAGGTATTAGTGATGTCCACGCACAA
CTCATGCCAGAAGATAAGGAAAGCATTATAAAAGATTATCAAAGTGACGGTAATAAAGTC
ATGATGGTCGGAGACGGTATCAACGATGCGCCGAGTCTTATAAGAGCGGATATTGGTATA
GCAATTGGTGCAGGTACAGATGTTGCAGTGGATTCAGGTGATATCATACTTGTTAAAAGT
AATCCATCAGATATCATTCATTTCTTGACCCTTTCAAATAATACTATGAGAAAAATGGTG
CAAAACTTATGGTGGGGTGCAGGTTATAATATTGTTGCTGTACCTTTAGCAGCTGGTATT
TTAGCATTTATTGGCTTGATTTTATCACCTGCAATAGGTGCTATTTTAATGTCTTTAAGT
ACAATTATCGTTGCAATTAATGCCTTTACATTAAAATTAAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_0078 [new locus tag: SAUSA300_RS00395 ]
- symbol: CopA
- description: ATPase copper transport
- length: 674
- theoretical pI: 5.19441
- theoretical MW: 73166.5
- GRAVY: 0.170178
⊟Function[edit | edit source]
- reaction: EC 3.6.3.4? ExPASyCu2+-exporting ATPase ATP + H2O + Cu2+(Side 1) = ADP + phosphate + Cu2+(Side 2)
- TIGRFAM: Cellular processes Detoxification copper-translocating P-type ATPase (TIGR01511; EC 3.6.3.4; HMM-score: 609.5)Transport and binding proteins Cations and iron carrying compounds copper-translocating P-type ATPase (TIGR01511; EC 3.6.3.4; HMM-score: 609.5)heavy metal translocating P-type ATPase (TIGR01525; EC 3.6.3.-; HMM-score: 578.1)and 15 moreTransport and binding proteins Cations and iron carrying compounds cadmium-translocating P-type ATPase (TIGR01512; EC 3.6.3.3; HMM-score: 369.2)HAD ATPase, P-type, family IC (TIGR01494; EC 3.6.3.-; HMM-score: 288.2)Transport and binding proteins Cations and iron carrying compounds K+-transporting ATPase, B subunit (TIGR01497; EC 3.6.3.12; HMM-score: 183.5)plasma-membrane proton-efflux P-type ATPase (TIGR01647; EC 3.6.3.6; HMM-score: 176.5)calcium-translocating P-type ATPase, PMCA-type (TIGR01517; EC 3.6.3.8; HMM-score: 145.4)Transport and binding proteins Cations and iron carrying compounds magnesium-translocating P-type ATPase (TIGR01524; EC 3.6.3.2; HMM-score: 111.8)P-type ATPase of unknown pump specificity (type V) (TIGR01657; HMM-score: 109.2)calcium-transporting P-type ATPase, PMR1-type (TIGR01522; EC 3.6.3.8; HMM-score: 107.2)Transport and binding proteins Cations and iron carrying compounds calcium-translocating P-type ATPase, SERCA-type (TIGR01116; EC 3.6.3.8; HMM-score: 102)Energy metabolism ATP-proton motive force interconversion Na,H/K antiporter P-type ATPase, alpha subunit (TIGR01106; EC 3.6.3.-; HMM-score: 91.2)potassium/sodium efflux P-type ATPase, fungal-type (TIGR01523; EC 3.6.3.-; HMM-score: 72)Unknown function Enzymes of unknown specificity Cof-like hydrolase (TIGR00099; HMM-score: 21.7)Amino acid biosynthesis Serine family phosphoserine phosphatase SerB (TIGR00338; EC 3.1.3.3; HMM-score: 21.5)phosphoglycolate phosphatase, TA0175-type (TIGR01487; EC 3.1.3.18; HMM-score: 18.4)phospholipid-translocating P-type ATPase, flippase (TIGR01652; EC 3.6.3.1; HMM-score: 15.7)
- TheSEED :
- Cu+ P-type ATPase
Respiration Electron accepting reactions Terminal cytochrome C oxidases Copper-translocating P-type ATPase (EC 3.6.3.4)and 1 more - PFAM: no clan defined E1-E2_ATPase; E1-E2 ATPase (PF00122; HMM-score: 167.5)and 4 moreHAD (CL0137) Hydrolase; haloacid dehalogenase-like hydrolase (PF00702; HMM-score: 96.4)Hydrolase_3; haloacid dehalogenase-like hydrolase (PF08282; HMM-score: 18.7)no clan defined DUF1980; DUF1980 N-terminal domain (PF09323; HMM-score: 13)DUF6773; Family of unknown function (DUF6773) (PF20563; HMM-score: 9.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 9.99
- Cellwall Score: 0.01
- Extracellular Score: 0.01
- Internal Helices: 8
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9999
- Cell wall & surface Score: 0
- Extracellular Score: 0.0001
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.025744
- TAT(Tat/SPI): 0.000772
- LIPO(Sec/SPII): 0.006018
- predicted transmembrane helices (TMHMM): 8
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNHSNQMHHDNHASHDHHSGHAHHHGNFKVKFFVSLIFAIPIILLSPLMGVNLPFQFTFPGSEWVVLILSTILFFYGGKPFLSGGKDEIATKKPGMMTLVALGISVAYIYSLYAFYMNNFSSATGHTMDFFWELATLILIMLLGHWIEMNAVGNAGDALKKMAELLPNSAIKVMDNGQREEVKISDIMTDDIVEVKAGESIPTDGIIVQGQTSIDESLVTGESKKVQKNQNDNVIGGSINGSGTIQVKVTAVGEDGYLSQVMGLVNQAQNDKSSAELLSDKVAGYLFYFAVSVGVISFIVWMLIQNDVDFALERLVTVLVIACPHALGLAIPLVTARSTSIGAHNGLIIKNRESVEIAQHIDYVMMDKTGTLTEGNFSVNHYESFKNDLSNDTILSLFASLESQSNHPLAISIVDFAKSKNVSFTNPQDVNNIPGVGLEGLIDNKTYKITNVSYLDKHKLNYDDDLFTKLAQQGNSISYLIEDQQVIGMIAQGDQIKESSKQMVADLLSRNITPVMLTGDNNEVAHAVAKELGISDVHAQLMPEDKESIIKDYQSDGNKVMMVGDGINDAPSLIRADIGIAIGAGTDVAVDSGDIILVKSNPSDIIHFLTLSNNTMRKMVQNLWWGAGYNIVAVPLAAGILAFIGLILSPAIGAILMSLSTIIVAINAFTLKLK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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