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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0092 [new locus tag: SAUSA300_RS00480 ]
  • pan locus tag?: SAUPAN000386000
  • symbol: SAUSA300_0092
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_0092 [new locus tag: SAUSA300_RS00480 ]
  • symbol: SAUSA300_0092
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 100549..101010
  • length: 462
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    GTGAATTTATATCAAAGCAACATTGAAAAGGTTACAGATAATCGTCATAGCAAAGGTGCC
    AACTTTCATAATGATGATTACGAACAAATTTTAATCAAAGTTTTAGAATCAGATATTATT
    ATTTTTTCAACACCACTCTATTGGTACTCCATGAGTGCGTCTTTAAAACTCTTCATTGAT
    AGATGGACCGAGTCATTGCGAGATACGCAAATAGACAACTTCAAAGAAATCATGTCACAA
    AAAAAGTATTTGATTTTAATCATAGGTGGCGACAATCCGCATACCAAAGCACAACCTTTA
    GTCAACCAATTCAAATTAATATTTGAGTTTATGAATATTACTAACTATAGATTTTTGATC
    GGCGAAGGCAATAAACCATTCGATATTTTAAACGACTCTCAATTTATAGAAGAGCTCGCA
    AATATAAATCTTGCATTGAAAAAAGGTGATATTTATGACTGA
    60
    120
    180
    240
    300
    360
    420
    462

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_0092 [new locus tag: SAUSA300_RS00480 ]
  • symbol: SAUSA300_0092
  • description: hypothetical protein
  • length: 153
  • theoretical pI: 4.96233
  • theoretical MW: 17962.4
  • GRAVY: -0.32549

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Central intermediary metabolism Sulfur metabolism FMN reductase (TIGR03567; EC 1.5.1.38; HMM-score: 18.1)
    FMN reductase (TIGR03566; EC 1.5.1.-; HMM-score: 15)
    and 1 more
    LLM-partnered FMN reductase, CE1759 family (TIGR04037; EC 1.-.-.-; HMM-score: 11.9)
  • TheSEED  :
    • Trp repressor binding protein
  • PFAM:
    Flavoprotein (CL0042) Flavodoxin_2; Flavodoxin-like fold (PF02525; HMM-score: 56.7)
    and 2 more
    FMN_red; NADPH-dependent FMN reductase (PF03358; HMM-score: 44.5)
    no clan defined Myco_haema; Mycoplasma haemagglutinin (PF05692; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001272
    • TAT(Tat/SPI): 0.000157
    • LIPO(Sec/SPII): 0.000466
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNLYQSNIEKVTDNRHSKGANFHNDDYEQILIKVLESDIIIFSTPLYWYSMSASLKLFIDRWTESLRDTQIDNFKEIMSQKKYLILIIGGDNPHTKAQPLVNQFKLIFEFMNITNYRFLIGEGNKPFDILNDSQFIEELANINLALKKGDIYD

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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