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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0272 [new locus tag: SAUSA300_RS01460 ]
  • pan locus tag?: SAUPAN001165000
  • symbol: SAUSA300_0272
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_0272 [new locus tag: SAUSA300_RS01460 ]
  • symbol: SAUSA300_0272
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 324018..324938
  • length: 921
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGAAGCCTTATATACAACTTGTTGTGTTCAAGCAATGGTTACAATACATCTTGCTCGTA
    ACAACCATTGTCATCGCACTCGTACTTATTGGTATCGGTTACCGTGTAGCACATGACAAC
    TTCAAAATACCGATTACCATTCAAGATTTAGACCAAACCACTGCATCAAAATCATTCGTC
    AATAAAATTAAACAATCTGACTATGTAACTATTAAAAAAGTCGATGAAGATGAAAGCTAT
    ATTGAAGATGATGTTACTAAAAAGGAAGCTATTTTAAGTATGCAAATTCCTAAAGGTTTC
    TCTCAAAAATTAAAAGAGAACCGTTTAAAAGAAACGATACAGTTATATGGTAGAGATGAC
    TTTATAGGTGGTATTGCTGTAGAAATTGTTAGTAGTTCATTATATGAGCAGCAAATTCCT
    AACATTATTTATGAACACCTTGAGGATATGAAACAGCATCAATCCATCGATGCTATCAAC
    AAGTCCTATCATAAACATACACCTGAATCTAAAATCAAATTTGTGTCGCTTACTAAACAA
    GCACAACACTCTATTTCAATTAGCTTAATCTTTGCGGTGATTTTATTTGTTAGCGCTGTT
    CAAGTAGTACTTCATTATCGTTTAAACCAACAAGCAGCATTGCAACGATTATCACAATAT
    CATTTAAGCCGTTTCAAACTATATAGTACTTATGTAATGACACATACGATTTTGTTATTG
    TTGGTACTATTGGCAGTTAGTCTATATTTGTCTCAACCACTCAGCTTAATATTTTACTTA
    AAATCACTGTTACTTATATTGATTTATGAGATAGGTATCGTCTTTATCTTATTCCATATT
    CAAACAATAAGTCATCGATTATTCATGACATTTATATATGCACTTGCTATGGGTATCGTA
    TACTTGATTATTTTCATGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    921

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_0272 [new locus tag: SAUSA300_RS01460 ]
  • symbol: SAUSA300_0272
  • description: hypothetical protein
  • length: 306
  • theoretical pI: 9.43777
  • theoretical MW: 35409.6
  • GRAVY: 0.376797

⊟Function[edit | edit source]

  • TIGRFAM:
    YhgE/Pip N-terminal domain (TIGR03061; HMM-score: 15)
    and 2 more
    Metabolism Energy metabolism Electron transport cytochrome c oxidase, subunit II (TIGR02866; EC 1.9.3.1; HMM-score: 9.4)
    Cellular processes Cellular processes Adaptations to atypical conditions phage shock protein B (TIGR02976; HMM-score: 7.9)
  • TheSEED  :
    • FIG01107872: hypothetical protein
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 44.9)
    and 1 more
    no clan defined Chordopox_A13L; Chordopoxvirus A13L protein (PF05961; HMM-score: 8.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.052521
    • TAT(Tat/SPI): 0.00052
    • LIPO(Sec/SPII): 0.006714
  • predicted transmembrane helices (TMHMM): 5

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKPYIQLVVFKQWLQYILLVTTIVIALVLIGIGYRVAHDNFKIPITIQDLDQTTASKSFVNKIKQSDYVTIKKVDEDESYIEDDVTKKEAILSMQIPKGFSQKLKENRLKETIQLYGRDDFIGGIAVEIVSSSLYEQQIPNIIYEHLEDMKQHQSIDAINKSYHKHTPESKIKFVSLTKQAQHSISISLIFAVILFVSAVQVVLHYRLNQQAALQRLSQYHLSRFKLYSTYVMTHTILLLLVLLAVSLYLSQPLSLIFYLKSLLLILIYEIGIVFILFHIQTISHRLFMTFIYALAMGIVYLIIFM

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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