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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0300 [new locus tag: SAUSA300_RS01600 ]
- pan locus tag?: SAUPAN000520000
- symbol: SAUSA300_0300
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_0300 [new locus tag: SAUSA300_RS01600 ]
- symbol: SAUSA300_0300
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 351162..351662
- length: 501
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3913867 NCBI
- RefSeq: YP_493014 NCBI
- BioCyc: see SAUSA300_RS01600
- MicrobesOnline: 1291815 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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481ATGACTTTCGAAGGAAAACTAAGTCAAATGTACAACGAGATTGCGAATGAGATTAGTGGG
ATGATACCGGTAGAATGGGAGCAAGTATTTACAATAGCTTATGTAACTGATCAAGCTGGA
GAAGTCATCTTTAATTATACTAAACCAGATAGTGATGAATTAAATTATTATTCAGACATA
CCTAAAGATTGCAATGTCTCAAAAGATATTTTTAAGAATTCATGGTTTAAAGTTTATCGA
ATGTTTGATGAGTTAAGAGAAACTTTTAAAGAAGAAGGGCTTGAACCATGGACATCATGC
GAATTTGACTTTACAAGAGATGGCAAATTGAATGTATCTTTTGATTATATAGATTGGATA
AATACAGAGTTTGATCAATTGGGCCGTCAAAATTATTATATGTACAAAAAATTTGGGGTT
ATACCAGAAATGGAATATGAAATGGAAGAAGTTAAAGAAATCGAACAATATATTAAAGAG
CAAGAAGAAGCTGAACAATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_0300 [new locus tag: SAUSA300_RS01600 ]
- symbol: SAUSA300_0300
- description: hypothetical protein
- length: 166
- theoretical pI: 3.93128
- theoretical MW: 20039.2
- GRAVY: -0.735542
⊟Function[edit | edit source]
- TIGRFAM: conserved hypothetical protein (TIGR01741; HMM-score: 270.7)
- TheSEED :
- Repetitive hypothetical protein near ESAT cluster, SA0282 homolog
- PFAM: no clan defined DUF600; Protein of unknown function, DUF600 (PF04634; HMM-score: 171.4)and 2 moreDUF1031; Protein of unknown function (DUF1031) (PF06275; HMM-score: 14.7)Holin-II (CL0563) Phage_holin_2_2; Phage holin T7 family, holin superfamily II (PF10746; HMM-score: 13.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.006301
- TAT(Tat/SPI): 0.000387
- LIPO(Sec/SPII): 0.000632
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTFEGKLSQMYNEIANEISGMIPVEWEQVFTIAYVTDQAGEVIFNYTKPDSDELNYYSDIPKDCNVSKDIFKNSWFKVYRMFDELRETFKEEGLEPWTSCEFDFTRDGKLNVSFDYIDWINTEFDQLGRQNYYMYKKFGVIPEMEYEMEEVKEIEQYIKEQEEAEQ
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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