PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_0342 [new locus tag: SAUSA300_RS01815 ]
• pan locus tag^?: SAUPAN001879000
• symbol: SAUSA300_0342
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Additional information (user-provided)

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_0342 [new locus tag: SAUSA300_RS01815 ]
• symbol: SAUSA300_0342
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 394736..395131
• length: 396
• essential: unknown

⊟Accession numbers

• Gene ID: 3914371 NCBI
• RefSeq: YP_493056 NCBI
• BioCyc: see SAUSA300_RS01815
• MicrobesOnline: 1291857 MicrobesOnline

⊟Phenotype

⊟Additional information (user-provided)

⊟DNA sequence

• 1
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  ATGAGCAGTGCCTCCTTTAATAGCATTTTAGCACTGTTTTGTCGTATTTTTAAATATAAA
  TTTGGAATGAATAATAAAGTAGTGATTAAATTAAGTTGTGTGATAGGAAACTTGGACATC
  AATCAAAGTAATAGGCACTACAACGCTTATTGGCGGGGCCCCAACAAAGAAGCTGACGAA
  AAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGGCCCCAACATAGAGAAATTGGGTCC
  GTAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAATTTCGAAAAGAAA
  TTCTACAAGCAATGCAAGTTGGCGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTA
  CAAGCAATGCAAGTTGGGGAAGGACAACAAATTTAA
  60
  120
  180
  240
  300
  360
  396
  

⊟Protein

⊟General

• locus tag: SAUSA300_0342 [new locus tag: SAUSA300_RS01815 ]
• symbol: SAUSA300_0342
• description: hypothetical protein
• length: 131
• theoretical pI: 9.70199
• theoretical MW: 14987.9
• GRAVY: -0.656489

⊟Function

• TIGRFAM:
• TheSEED  :
  • FIG01107884: hypothetical protein
• PFAM:
  E-set (CL0159) Adeno_E3_CR1; Adenovirus E3 region protein CR1 (PF02440; HMM-score: 13.2)
  SH3 (CL0010) PSI_PsaE; Photosystem I reaction centre subunit IV / PsaE (PF02427; HMM-score: 12.6)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.9076
  • Cytoplasmic Membrane Score: 0
  • Cell wall & surface Score: 0.0001
  • Extracellular Score: 0.0923
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 0.67
  • Signal peptide possibility: -0.5
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.03398
  • TAT(Tat/SPI): 0.000765
  • LIPO(Sec/SPII): 0.015576
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 87160933 NCBI
• RefSeq: YP_493056 NCBI
• UniProt: A0A0H2XHK9 UniProt

⊟Additional information (user-provided)

⊟Protein sequence

• MSSASFNSILALFCRIFKYKFGMNNKVVIKLSCVIGNLDINQSNRHYNAYWRGPNKEADEKSAYNNVQVGDGPQHREIGSVISTDNASWRGPNIENFEKKFYKQCKLAGPQHREFRKEILQAMQVGEGQQI

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: no polycistronic organisation predicted

⊟Regulation

• regulator:

⊟Additional information (user-provided)

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Additional information (user-provided)

⊟Other information (user-provided)

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications