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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0582 [new locus tag: SAUSA300_RS03110 ]
- pan locus tag?: SAUPAN002447000
- symbol: SAUSA300_0582
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_0582 [new locus tag: SAUSA300_RS03110 ]
- symbol: SAUSA300_0582
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 655598..656143
- length: 546
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3912932 NCBI
- RefSeq: YP_493285 NCBI
- BioCyc: see SAUSA300_RS03110
- MicrobesOnline: 1292097 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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481
541ATGGTCGATGTAATAAGAACTTGGCTTGTATACTTTTTTCCATTTATTAATTGGTTCATT
CCAAAAAGGTGCGCCAAAATTAGTAGAGAAGAGTATGAAAAACTGAACACTGTTAAGCCA
GTTAAAAATAAAAATTTTTGGCCTGTTGTAGGAGGAACAATCCTACTAGGTGCTACTTCC
AGAAAGTACATACACTTACTTAATATTCAATTAGAAAAAAGATCGGTTATATTTATATGC
TTCGTTGTATTTCTATGTATTTTAATCTTTTTTGTGCTTCTGAATCGAAAATTAAAATTG
AAAGTTTTCGATAATAAAAAAGAAGAACAAAAAATAATTTTAGTACCAACATTAAAAAAT
GCTGTTCTTATATTATATGGCTATTTGTTGATTGGAGGCATGTCAATATTAGCTTTAAGC
ATGTTGCTGACATTAGAAAACCAGAATTTAATAACTTTTATAGCTTGGGGTATGGGGTTA
ATGTTGTTTTTCTTGATGAATATAACACTCATTGTCAATAAAACAGTCAAAGTTATAAAA
AGGTGA60
120
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540
546
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_0582 [new locus tag: SAUSA300_RS03110 ]
- symbol: SAUSA300_0582
- description: hypothetical protein
- length: 181
- theoretical pI: 10.6962
- theoretical MW: 21146.8
- GRAVY: 0.677901
⊟Function[edit | edit source]
- TIGRFAM: tandem five-TM protein (TIGR01218; HMM-score: 140.4)
- TheSEED :
- repetative hypothetical protein , fig|282458.1.peg.574 homolog
- PFAM: no clan defined DUF443; Protein of unknown function (DUF443) (PF04276; HMM-score: 172.8)and 3 moreLysE (CL0292) TauE; Sulfite exporter TauE/SafE (PF01925; HMM-score: 23.1)no clan defined DHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 10.6)DUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 6.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.037945
- TAT(Tat/SPI): 0.001425
- LIPO(Sec/SPII): 0.016088
- predicted transmembrane helices (TMHMM): 5
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MVDVIRTWLVYFFPFINWFIPKRCAKISREEYEKLNTVKPVKNKNFWPVVGGTILLGATSRKYIHLLNIQLEKRSVIFICFVVFLCILIFFVLLNRKLKLKVFDNKKEEQKIILVPTLKNAVLILYGYLLIGGMSILALSMLLTLENQNLITFIAWGMGLMLFFLMNITLIVNKTVKVIKR
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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