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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0740 [new locus tag: SAUSA300_RS03990 ]
- pan locus tag?: SAUPAN002670000
- symbol: SAUSA300_0740
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_0740 [new locus tag: SAUSA300_RS03990 ]
- symbol: SAUSA300_0740
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 822793..823443
- length: 651
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3913463 NCBI
- RefSeq: YP_493442 NCBI
- BioCyc: see SAUSA300_RS03990
- MicrobesOnline: 1292255 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601ATGGGTGTACATCAATATTTTAAAAGATTATCAGATATGGAAAGACTTATAAGATTACCT
GGAAAATTTAAATATTTTGAACACAATGTTGCAGCACACTCCTTTAAAGTAACTAAAATT
GCACAATATCTAGCAACAGTTGAAGAATATCATGGACGAAAGATTAATTGGAAAAGCTTA
TATGAAAAAGCATTAAATCATGATTTCGCCGAAGTGTTTACTGGTGATATAAAAACACCT
GTTAAATATGCGAGTAGTGAATTAAAAAAATTATTTTCGCAAGTTGAAGAAGAAATGGTA
GAGACCTTTATTGAAGAAGAAATTCCATTACAATATAGAGATGTTTATAAGCAACGACTG
CAAGAAGGTAAAGATGATTCATTAGAAGGCCAAATACTTTCAGTTGCTGATAAAATTGAT
TTGCTTTATGAAACATTTGGAGAAATACAAAAACGTAATCCCGAAGAATTATTTTTCGAA
ATTTATGAAATGAGTCTAGAAACAATTATTCAATTTGACCATTTAGCATCTGTACAAGAT
TTTATTAATAATATCATTCCAGAAATGTTGACTGAAAACTTTATACCTAGAACAGAATTA
AGAGAAACAACCATGAACATTTTAAATAAAAGAAAAGAGGAAAATGAATGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_0740 [new locus tag: SAUSA300_RS03990 ]
- symbol: SAUSA300_0740
- description: hypothetical protein
- length: 216
- theoretical pI: 4.80408
- theoretical MW: 25704
- GRAVY: -0.559722
⊟Function[edit | edit source]
- TIGRFAM: Hypothetical proteins Conserved TIGR00295 family protein (TIGR00295; HMM-score: 16)
- TheSEED :
- Nucleotidase YfbR, HD superfamily
- PFAM: HD_PDEase (CL0237) HD_2; HD containing hydrolase-like enzyme (PF12917; HMM-score: 280)and 2 moreHD_3; HD domain (PF13023; HMM-score: 34.1)HD; HD domain (PF01966; HMM-score: 19.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002732
- TAT(Tat/SPI): 0.00025
- LIPO(Sec/SPII): 0.000669
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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