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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_0754 [new locus tag: SAUSA300_RS04070 ]
- pan locus tag?: SAUPAN002699000
- symbol: SAUSA300_0754
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_0754 [new locus tag: SAUSA300_RS04070 ]
- symbol: SAUSA300_0754
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 841010..841639
- length: 630
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3912844 NCBI
- RefSeq: YP_493455 NCBI
- BioCyc: see SAUSA300_RS04070
- MicrobesOnline: 1292269 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601ATGTCGAATCAAAATTACGACTACAATAAAAATGAAGATGGAAGTAAGAAGAAAATGAGT
ACAACAGCGAAAGTAGTTAGCATTGCGACGGTATTGCTATTACTCGGAGGATTAGTATTT
GCAATTTTTGCATATGTAGATCATTCGAATAAAGCTAAAGAACGTATGTTGAACGAACAA
AAGCAGGAACAAAAAGAAAAGCGTCAAAAAGAAAATGCAGAAAAAGAGAGAAAGAAAAAG
CAACAAGAGGAAAAAGAGCAGAATGAGCTAGATTCACAAGCAAACCAATATCAGCAATTG
CCACAGCAGAATCAATATCAATATGTGCCACCTCAGCAACAAGCACCTACAAAGCAACGT
CCTGCTAAAGAAGAGAATGATGATAAAGCATCAAAGGATGAGTCGAAAGATAAGGATGAC
AAAGCATCTCAAGATAAATCAGATGATAATCAGAAGAAAACTGATGATAATAAACAACCA
GCTCAGCCTAAACCACAGCCGCAACAACCAACACCAAAGCCAAATAATAATCAACAAAAC
AATCAATCAAATCAGCAAGCAAAACCACAAGCACCACAACAAAATAGCCAATCAACAACA
AATAAACAAAATAATGCTAATGATAAGTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_0754 [new locus tag: SAUSA300_RS04070 ]
- symbol: SAUSA300_0754
- description: hypothetical protein
- length: 209
- theoretical pI: 9.70055
- theoretical MW: 24070
- GRAVY: -1.97368
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Adaptations to atypical conditions phage shock protein C (TIGR02978; HMM-score: 11.5)and 1 moreDNA metabolism Other MutS2 family protein (TIGR01069; HMM-score: 3.5)
- TheSEED :
- FIG01107882: hypothetical protein
- PFAM: no clan defined DUF4887; Domain of unknown function (DUF4887) (PF16228; HMM-score: 171.7)and 9 moreDUF4199; Protein of unknown function (DUF4199) (PF13858; HMM-score: 20.7)DUF4574; Domain of unknown function (DUF4574) (PF15141; HMM-score: 18.6)Transporter (CL0375) Connexin; Connexin (PF00029; HMM-score: 15.2)no clan defined Neurensin; Neurensin (PF14927; HMM-score: 12.9)MaAIMP_sms; Putative methionine and alanine importer, small subunit (PF16951; HMM-score: 11.4)MFS (CL0015) TLC; TLC ATP/ADP transporter (PF03219; HMM-score: 9.8)GPCR_A (CL0192) 7tm_1; 7 transmembrane receptor (rhodopsin family) (PF00001; HMM-score: 6.9)Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 6.9)MFS (CL0015) Acatn; Acetyl-coenzyme A transporter 1 (PF13000; HMM-score: 6.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helix: 1
- LocateP: N-terminally anchored (No CS)
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: 0
- N-terminally Anchored Score: 5
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.105218
- TAT(Tat/SPI): 0.000937
- LIPO(Sec/SPII): 0.005709
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDKASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQAPQQNSQSTTNKQNNANDK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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