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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1019 [new locus tag: SAUSA300_RS05485 ]
  • pan locus tag?: SAUPAN003347000
  • symbol: SAUSA300_1019
  • pan gene symbol?: ricF
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1019 [new locus tag: SAUSA300_RS05485 ]
  • symbol: SAUSA300_1019
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1116655..1117089
  • length: 435
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGATTAATGAAGCTTCACTAGCGATATTAGATGATATTGATGAACTAGCTGATATGATA
    GTTGCATCAGATATTTATGCATCATTTGAGCAAGCTAAACAGGCGCTCGAAAACAATGAC
    GAAGCACATTTACTTTATCAATCATTTTTAAAATCAAAAGAGAAATATGATGAAGTAATG
    CGATTCGGGAAATATCATCCTGATTATAAGAAAGTTATGTTAGAGACAAGACAACGCAAA
    AGAGCATATGAGATGCTTGACGTTGTGATGCATTACAAAGCTAGGGAAATGGCACTTCAA
    CATTTAATAGATGAAGTTGTTACGAAAATTGCGTACGCTGTTTCAGAACATGTCAAAATA
    GAAACAGGTAATCCATTCTTTCAAACATCACATAGTGGTTGTGCGACGGGCGGATCCTGT
    AATTGTTCATTATAA
    60
    120
    180
    240
    300
    360
    420
    435

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1019 [new locus tag: SAUSA300_RS05485 ]
  • symbol: SAUSA300_1019
  • description: hypothetical protein
  • length: 144
  • theoretical pI: 5.24638
  • theoretical MW: 16475.7
  • GRAVY: -0.35625

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 11.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 11.2)
    Genetic information processing Protein synthesis Translation factors translation initiation factor IF-3 (TIGR00168; HMM-score: 10.4)
  • TheSEED  :
    • Regulatory iron-sulfur containing complex subunit RicF
  • PFAM:
    no clan defined Com_YlbF; Control of competence regulator ComK, YlbF/YmcA (PF06133; HMM-score: 58)
    and 1 more
    IF3_C; Translation initiation factor IF-3, C-terminal domain (PF00707; HMM-score: 14.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002119
    • TAT(Tat/SPI): 0.000186
    • LIPO(Sec/SPII): 0.00041
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MINEASLAILDDIDELADMIVASDIYASFEQAKQALENNDEAHLLYQSFLKSKEKYDEVMRFGKYHPDYKKVMLETRQRKRAYEMLDVVMHYKAREMALQHLIDEVVTKIAYAVSEHVKIETGNPFFQTSHSGCATGGSCNCSL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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