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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003347000
- symbol?: ricF
- synonym:
- description?: regulator
- regulator
- putative DUF964-containing protein
- YlbF family regulator
- regulatory protein YlbF
- ComK regulator
- vacuolating cytotoxin paralog
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3715085..3715519
- synteny block?: BlockID0024310
- occurrence?: in 97% of 33 strains
ricF (ylbF): regulatory iron-sulfur containing RicT shuttle complex subunit RicF [1]
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1076
08BA02176:
C248_1146
11819-97:
MS7_1076
6850:
RSAU_001004
71193:
ST398NM01_1116
ECT-R 2:
ECTR2_974
ED133:
SAOV_1061
ED98:
SAAV_1086
HO 5096 0412:
SAEMRSA15_09490
JH1:
SaurJH1_1201
JH9:
SaurJH9_1179
JKD6008:
SAA6008_01074
JKD6159:
SAA6159_00974
LGA251:
SARLGA251_10320
M013:
M013TW_1051
MRSA252:
SAR1093
MSHR1132:
SAMSHR1132_09660
MSSA476:
SAS1054
Mu3:
SAHV_1111
Mu50:
SAV1119
MW2:
MW1002
RF122:
SAB0984
ST398:
SAPIG1116
T0131:
SAT0131_01158
TCH60:
HMPREF0772_12113 (ylbF)
TW20:
SATW20_11140
USA300_TCH1516:
USA300HOU_1058
VC40:
SAVC_04760
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MINEASLAILDDIDELADMIVASDIYASFEQAKQALENNDEAHLLYQSFLKSKEKYDEVM
N315 MINEASLAILDDIDELADMIVASDIYASFEQAKQALENNDEAHLLYQSFLKSKEKYDEVM
NCTC8325 MINEASLAILDDIDELADMIVASDIYASFEQAKQALENNDEAHLLYQSFLKSKEKYDEVM
USA300_FPR3757 MINEASLAILDDIDELADMIVASDIYASFEQAKQALENNDEAHLLYQSFLKSKEKYDEVM
************************************************************
COL RFGKYHPDYKKVMLETRQRKRAYEMLDVVMHYKAREMALQHLIDEVVTKIAYAVSEHVKI
N315 RFGKYHPDYKKVMLETRQRKRAYEMLDVVMHYKAREMALQHLIDEVVTKIAYAVSEHVKI
NCTC8325 RFGKYHPDYKKVMLETRQRKRAYEMLDVVMHYKAREMALQHLIDEVVTKIAYAVSEHVKI
USA300_FPR3757 RFGKYHPDYKKVMLETRQRKRAYEMLDVVMHYKAREMALQHLIDEVVTKIAYAVSEHVKI
************************************************************
COL ETGNPFFQTSHSGCATGGSCNCSL
N315 ETGNPFFQTSHSGCATGGSCNCSL
NCTC8325 ETGNPFFQTSHSGCATGGSCNCSL
USA300_FPR3757 ETGNPFFQTSHSGCATGGSCNCSL
************************
- ↑ Alexandre Le Scornet, Ambre Jousselin, Kamila Baumas, Gergana Kostova, Sylvain Durand, Leonora Poljak, Roland Barriot, Eve Coutant, Romain Pigearias, Gabriel Tejero, Jonas Lootvoet, Céline Péllisier, Gladys Munoz, Ciarán Condon, Peter Redder
Critical factors for precise and efficient RNA cleavage by RNase Y in Staphylococcus aureus.
PLoS Genet: 2024, 20(8);e1011349
[PubMed:39088561] [WorldCat.org] [DOI] (I e)Aaron DeLoughery, Jean-Benoît Lalanne, Richard Losick, Gene-Wei Li
Maturation of polycistronic mRNAs by the endoribonuclease RNase Y and its associated Y-complex in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2018, 115(24);E5585-E5594
[PubMed:29794222] [WorldCat.org] [DOI] (I p)