From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1740 [new locus tag: SAUSA300_RS09515 ]
  • pan locus tag?: SAUPAN004516000
  • symbol: SAUSA300_1740
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1740 [new locus tag: SAUSA300_RS09515 ]
  • symbol: SAUSA300_1740
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1923706..1924701
  • length: 996
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAGCAATCAATTCAAAAGCGAAGAAGAGCGAAGACAATGGGAACAATTCCAAGCTTTC
    CAAAATCAACAAAACCAACAGAACCAGCAATACGGACAAAAGAAATCTAAAAAAGGATGG
    TTCTGGGGCTGTGGTGGTTGTCTAGTATTATTTATTTTAATTATCATCGGTATTTCAGCT
    TGTACAGCTGGTATTACAGGTAACCTTGGCGGAAATAGTTCTAAAGAAACGAACAAAACC
    CATAAAATCGGTGAAACTGTTAAAAATGGCGACCTTGAAGTCACTGTAAATTCAGTGGAA
    ACTATGAAATCTGTAGGACCATCTCTTGCACCAACAAACGCTAAAGGTATATTTGTCGTT
    GCTGATGTGACGATTAAAAACAAAGGTAAAGAAGCGTTAACAATTGATAGTTCAATGTTT
    AAGCTAAAATCCGGTGATAAAACATTTGAAGCAGATAATACAGGTTCAATGTCTGCTAAT
    CAAAGTGACAATGGTAGTATAGAAAATTCATTTTTCTTACAGCGTATAAATCCAGATAGC
    ACTGCTCAAGGTAAAATTGTTTTCGATGTGTCAGAAAACATAGCCAACGCAAAAGATAAA
    AAATTAGAAGTTATTTCTAGTTTATTTAGCGTCAAGAAGATTACATTTGATTTATCCGAT
    GCTAAAAAAACATCAAAAGCTAAAAAAGACAAGCAAGATACAGAAGTAGCTGTTGCGAGT
    TCAAATAGCGATAATGTAAGTTATGAAGCTTCGGCTACTACACCTGCTACAACTTCTAGT
    GCGGATACTGATTCTGAAGATAGCGAAAAGTCTAGTAAAGATGAGGATAAGCAGAATGCG
    TCTAAAAGTGATAAATCTAGTGTAGAAAAAAGTGAATCTAATGAGGAAACTGCTCCTGTA
    GAGCCCATGCCCCATAGCAAACCTACCACTAGTGAAGCACCACCTAGCCAAAATATTCAC
    AATGAAGATAGCATGTACGACGCTTCAACAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    996

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1740 [new locus tag: SAUSA300_RS09515 ]
  • symbol: SAUSA300_1740
  • description: hypothetical protein
  • length: 331
  • theoretical pI: 4.86057
  • theoretical MW: 35864.1
  • GRAVY: -0.806042

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Hypothetical protein SAV1800
  • PFAM:
    MPT63-MPB63 (CL0524) DUF4352; Domain of unknown function (DUF4352) (PF11611; HMM-score: 122.8)
    and 2 more
    no clan defined DUF3792; Protein of unknown function (DUF3792) (PF12670; HMM-score: 14.5)
    Sec62; Translocation protein Sec62 (PF03839; HMM-score: 5.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP: Lipid anchored
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPII)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: GISACTA
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.114209
    • TAT(Tat/SPI): 0.008754
    • LIPO(Sec/SPII): 0.121632
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSNQFKSEEERRQWEQFQAFQNQQNQQNQQYGQKKSKKGWFWGCGGCLVLFILIIIGISACTAGITGNLGGNSSKETNKTHKIGETVKNGDLEVTVNSVETMKSVGPSLAPTNAKGIFVVADVTIKNKGKEALTIDSSMFKLKSGDKTFEADNTGSMSANQSDNGSIENSFFLQRINPDSTAQGKIVFDVSENIANAKDKKLEVISSLFSVKKITFDLSDAKKTSKAKKDKQDTEVAVASSNSDNVSYEASATTPATTSSADTDSEDSEKSSKDEDKQNASKSDKSSVEKSESNEETAPVEPMPHSKPTTSEAPPSQNIHNEDSMYDASTE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SAUSA300_1740&oldid=88956"