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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_1749 [new locus tag: SAUSA300_RS09570 ]
- pan locus tag?: SAUPAN004549000
- symbol: SAUSA300_1749
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_1749 [new locus tag: SAUSA300_RS09570 ]
- symbol: SAUSA300_1749
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1929784..1930161
- length: 378
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3914240 NCBI
- RefSeq: YP_494440 NCBI
- BioCyc: see SAUSA300_RS09570
- MicrobesOnline: 1293264 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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121
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241
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361TTGAATAAAAAATATCTTATGATTGTAATTATAATTTTAATATTGATTCTAGGCGGAATC
TTTTTGAAGATGAAATATGACGAAAAGAAATATTATGATGAACAAAAAGAAAGAATAACG
ATTTATATGAAGTACAATGTGAAAGGTTATAAAAATATAAGCTTCGCTAATTTTAAAGAA
AACCCAATGGATGGTTATTCTATTAGTGGTTATATAAATAATGATAAAAAGTTATCATTT
ACAGCTGGTATAAGATCTGTTGATGATTTTCAATTTGATACCGATATTTCTTATACAGAT
GAATTGGGTAGAAAATTTAATAAAAATCCTAAGTCAGTTTCTGAAATAAAAAAAGAGCAA
AATACGTCCAATAAATAA60
120
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240
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378
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_1749 [new locus tag: SAUSA300_RS09570 ]
- symbol: SAUSA300_1749
- description: hypothetical protein
- length: 125
- theoretical pI: 9.79855
- theoretical MW: 14729.9
- GRAVY: -0.6296
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- [Genomic island nu Sa beta2]
- PFAM: no clan defined DUF1433; Protein of unknown function (DUF1433) (PF07252; HMM-score: 122.8)and 3 moreDUF1310; Protein of unknown function (DUF1310) (PF07006; HMM-score: 20.5)2-oxogl_dehyd_N; 2-oxoglutarate dehydrogenase N-terminus (PF16078; HMM-score: 13.3)UPF0370; Uncharacterised protein family (UPF0370) (PF13980; HMM-score: 12.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- LocateP: N-terminally anchored (No CS)
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: 2
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.215926
- TAT(Tat/SPI): 0.002721
- LIPO(Sec/SPII): 0.078587
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNKKYLMIVIIILILILGGIFLKMKYDEKKYYDEQKERITIYMKYNVKGYKNISFANFKENPMDGYSISGYINNDKKLSFTAGIRSVDDFQFDTDISYTDELGRKFNKNPKSVSEIKKEQNTSNK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.