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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1846 [new locus tag: SAUSA300_RS10080 ]
  • pan locus tag?: SAUPAN004845000
  • symbol: SAUSA300_1846
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1846 [new locus tag: SAUSA300_RS10080 ]
  • symbol: SAUSA300_1846
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2007132..2008175
  • length: 1044
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGTCTATCGCTTCTTTACTACCGGATGATGTTGGTCTGAAAGCCTTAGCTGGTGTCAGT
    GCTGTTGTTGCAATGCAACCTAGTATTTATCGTTCATTTAAAACAGTTTCTGATCAAGCA
    TTGGGTAACATTATAGGTGCCATACTATCTGTTACAATGGTAACAATTTTTAGTGATAAT
    TTTATCATTATGGGTGTTACCGTCATAGTACTTATTGCTATTTTATTTAAATTTAATTTA
    GCACATGTTGCTACTTTGGCGAGTGTAACAGCATTAATCATTATGGGACAACATACCGGT
    TCTTTCTATATTACCGCCTTTTACAGGTTTGTACTTGTAATGATTGGTGTCATAAGTTCA
    TCTCTAGTTAACTTTGTGTTTCTACCACCTAAATTTGAAACAAAAATTTACTATAATTCA
    TTAAATATATCCTCAGATATTTTTATGTGGTTTAAATTAGTATTAAATGATACGACGGAG
    TTTAATAATATTAAACAAGATAGTCATAATTTAAAACAACGTGTCGAAAAGTTAGAGAAA
    ATTTATGATTACTATAGCGAAGAACGTCCTATTACAAAAAAACATATTCACCAACAGAAT
    AGAAAGAAAATACTTTTCAGAGAAGTAGTTCAGACGACTAGACAAGCTTATGAAGTATTA
    AACAAATTGTCGCGTTATCAAAACGACTTATATTTACTTAATAACAATTTCCTATTACAA
    ATCAAATTAGATTTAGATTCATTAACTGCTTTTCACGAGCAAATTTTAGCTAGCCTTTCT
    AAAAAAGCACGTTATAATGTGACACATGTTGATTATGAGTTAGATAATCCGCAGAAAAAA
    GATTTATTGTCCACATTTCAGCATGAGTTAATAAATCATCCTTATCAAACGGAATATTCG
    TTTGCCAATGTTATGCAAATTGTTGCAGCCATCGAAGAGTATCGACACCATTTAGAGCAT
    TTAGACCGCATAAGAATTAGCTTTTTCACATATCATAGATCTGATGCAGACATTGAAATT
    GTTGAAGAAGACTTTGATTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1044

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1846 [new locus tag: SAUSA300_RS10080 ]
  • symbol: SAUSA300_1846
  • description: hypothetical protein
  • length: 347
  • theoretical pI: 6.85581
  • theoretical MW: 40123
  • GRAVY: 0.0564841

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Putative lipoprotein SAV1865
    Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles CPO analysis  Putative lipoprotein SAV1865
  • PFAM:
    FUSC (CL0307) ArAE_1; Aromatic acid exporter family member 1 (PF06081; HMM-score: 71.3)
    and 6 more
    FUSC_2; Fusaric acid resistance protein-like (PF13515; HMM-score: 36.5)
    FUSC; Fusaric acid resistance protein family (PF04632; HMM-score: 35.9)
    no clan defined PspB; Phage shock protein B (PF06667; HMM-score: 13.8)
    Yip1 (CL0112) DUF1700; Protein of unknown function (DUF1700) (PF08006; HMM-score: 12.9)
    FUSC (CL0307) HPP; HPP family (PF04982; HMM-score: 10)
    no clan defined DUF4118; Domain of unknown function (DUF4118) (PF13493; HMM-score: 8.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012203
    • TAT(Tat/SPI): 0.001714
    • LIPO(Sec/SPII): 0.00539
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSIASLLPDDVGLKALAGVSAVVAMQPSIYRSFKTVSDQALGNIIGAILSVTMVTIFSDNFIIMGVTVIVLIAILFKFNLAHVATLASVTALIIMGQHTGSFYITAFYRFVLVMIGVISSSLVNFVFLPPKFETKIYYNSLNISSDIFMWFKLVLNDTTEFNNIKQDSHNLKQRVEKLEKIYDYYSEERPITKKHIHQQNRKKILFREVVQTTRQAYEVLNKLSRYQNDLYLLNNNFLLQIKLDLDSLTAFHEQILASLSKKARYNVTHVDYELDNPQKKDLLSTFQHELINHPYQTEYSFANVMQIVAAIEEYRHHLEHLDRIRISFFTYHRSDADIEIVEEDFDL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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