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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_2591 [new locus tag: SAUSA300_RS14405 ]
  • pan locus tag?: SAUPAN006399000
  • symbol: SAUSA300_2591
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_2591 [new locus tag: SAUSA300_RS14405 ]
  • symbol: SAUSA300_2591
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2819685..2820113
  • length: 429
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAGCGAAAAACTTCAAGTAAAACAAGAATTTAACGGCGTTACAAGGCAATACTTGAAT
    TTCAGAACAGATAGTATCGATGATCTGGATAAGTTCAAAAAAGAATTCAAACCTGTTATG
    CACTTAAAAGGTGATGCATTCAATCAACAGTTACAATCTTTGATTAACAAATATCCACAA
    ATACAAAAAAATATGAAATCAGAGTTCATTGCTTATTATGATAAAGAAAAAAATAGAGAA
    ACAGTAAAAAACTATGCTTGGAACCTTCAAAAATCTATAAATGACATTATGCAATCATAT
    CCTAGCACAAAATTTGTACAGTTTTATAAAGATGATGTTTCCCCGTCAATGGTAGATGGA
    AATGGCCGTTTAAAATCGGATACTAATGTAATTTCCATCGAGGGAGGAAAGTATGATGAG
    AACAAATGA
    60
    120
    180
    240
    300
    360
    420
    429

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_2591 [new locus tag: SAUSA300_RS14405 ]
  • symbol: SAUSA300_2591
  • description: hypothetical protein
  • length: 142
  • theoretical pI: 9.41704
  • theoretical MW: 16743.8
  • GRAVY: -0.992254

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Pentose phosphate pathway transketolase (TIGR00232; EC 2.2.1.1; HMM-score: 11.1)
  • TheSEED  :
    • hypothetical protein
  • PFAM:
    no clan defined DUF2205; Short coiled-coil protein (PF10224; HMM-score: 14.9)
    RBM_T3SS-Flag (CL0873) Spore_III_AF; Stage III sporulation protein AF (Spore_III_AF) (PF09581; HMM-score: 14.7)
    AB_hydrolase (CL0028) COesterase; Carboxylesterase family (PF00135; HMM-score: 13.7)
    no clan defined Aip3p_Bud6_N; Aip3p/Bud6 N-terminal domain (PF23153; HMM-score: 12.9)
    Viral_Gag (CL0148) Arc_capsid_dom; Activity-regulated cytoskeleton-associated protein, capsid domain (PF21395; HMM-score: 12.8)
    HTH (CL0123) HrcA_DNA-bdg; Winged helix-turn-helix transcription repressor, HrcA DNA-binding (PF03444; HMM-score: 12.7)
    Toprim-like (CL0413) DUF3854; Domain of unknown function (DUF3854) (PF12965; HMM-score: 12.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.24
    • Cytoplasmic Membrane Score: 0.05
    • Cellwall Score: 0.8
    • Extracellular Score: 8.91
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.4612
    • Cytoplasmic Membrane Score: 0.0767
    • Cell wall & surface Score: 0.0009
    • Extracellular Score: 0.4612
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002006
    • TAT(Tat/SPI): 0.000285
    • LIPO(Sec/SPII): 0.000313
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSEKLQVKQEFNGVTRQYLNFRTDSIDDLDKFKKEFKPVMHLKGDAFNQQLQSLINKYPQIQKNMKSEFIAYYDKEKNRETVKNYAWNLQKSINDIMQSYPSTKFVQFYKDDVSPSMVDGNGRLKSDTNVISIEGGKYDENK

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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