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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS00360 [old locus tag: SAUSA300_0071 ]
- pan locus tag?: SAUPAN000819000
- symbol: SAUSA300_RS00360
- pan gene symbol?: —
- synonym:
- product: IS110 family transposase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS00360 [old locus tag: SAUSA300_0071 ]
- symbol: SAUSA300_RS00360
- product: IS110 family transposase
- replicon: chromosome
- strand: +
- coordinates: 78246..79445
- length: 1200
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (78246..79445) NCBI
- BioCyc: SAUSA300_RS00360 BioCyc
- MicrobesOnline: see SAUSA300_0071
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1141ATCGATTACTTAGGTGTTGATATTAGTAAAAGGAGTAGTGTAGTTGCACATTATAAAAAT
GGAAAATTCCAAAAAGAGTTTTTCATCCAAAATAATAAAAATGGCTACAATTATTTACTC
AAGTATTTGAATGACTTAGACCACCCACAACTCATTTTTGAATCTACAGGTATCTATTCA
AGAGGTATGGAACGATTTTGTTGTGTAAATCAAATTAACTATATTCAAATGAATCCGTTA
GAAGCCAAATTTAAAACGAGCGCTCTAAGATCATGGAAAACTGATCAGGCAGATGCTCAT
AAGCTTGCTTGTTTAGGACCGACGCTCAAACAAACAGGCAGCTTACCTATACATGAGTTA
ATATTCTTTGAATTAAGAGAACGTGCCCGTTTTCATCTAGAAATCGAGAATGAACAAAAT
CGACTTAAATTTCAGATTCTTGAATTACTCCATCAAACATTCCCTGGTTTAGAAAGATTA
TTTAGTAGTCGATATTCAATCATTGCACTCAACATCGCAGAAATTTTTACTCATCCAGAC
GTGGTTCTTGATATCGACAAGGATGTACTTATTACACATATATTCAATTCTACAGATAAG
GGAATGTCAATGGATAAAGCTACAAAATATGCACTTCAATTAAGAGTGATTGCTCAAGAA
AGCTATCCTAATGTCGATAGACATTCCTTTCTAGTCGAAAAATTACGCTTACTTATTCAA
CAATTAAAACAATCTATTCATCATCTCAAACAATTAGATGATGCCATGATTCAATTAGCA
CAACAACTCGATTATTTTGAAAATATTCATTCGATACCTGGTATTGGTAAGCTAAGCACA
GCTATGATTATTGGGGAGATTGGTGATATTAAGCGATTTAAATCAAATAAACAACTCAAC
GCTTTTGTAGGCATTGATATCAAACGATATCAATCAGGTCATACACACTGTAGAGATACC
ATCAACAAGCGTGGTAATAAAAAAGCGAGAAAACTTTTATTTTGGGTGATTATGAATATA
ATAAGAGGGCAGCATCATTATGACAATCATGTCGTCGATTATTACTACAAACTAAGAAAG
CAGCCTAATGAGAAACCTCATAAGACTGCCATCATTGCTTGTATAAATCGATTATTAAAA
ACGATTCATTATCTGGTAATGAATCATAAATTGTACGATTATCAAATGTCACCACATTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS00360 [old locus tag: SAUSA300_0071 ]
- symbol: SAUSA300_RS00360
- description: IS110 family transposase
- length: 399
- theoretical pI: 9.79007
- theoretical MW: 46801.9
- GRAVY: -0.402005
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_0071
- ⊞PFAM: HHH (CL0198) Transposase_20; Transposase IS116/IS110/IS902 family (PF02371; HMM-score: 76.5)no clan defined DEDD_Tnp_IS110; Transposase (PF01548; HMM-score: 64.1)and 3 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
- GI: see SAUSA300_0071
- RefSeq: WP_076035539 NCBI
- UniProt: see SAUSA300_0071
⊟Protein sequence[edit | edit source]
- MDYLGVDISKRSSVVAHYKNGKFQKEFFIQNNKNGYNYLLKYLNDLDHPQLIFESTGIYSRGMERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLGPTLKQTGSLPIHELIFFELRERARFHLEIENEQNRLKFQILELLHQTFPGLERLFSSRYSIIALNIAEIFTHPDVVLDIDKDVLITHIFNSTDKGMSMDKATKYALQLRVIAQESYPNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQLDYFENIHSIPGIGKLSTAMIIGEIGDIKRFKSNKQLNAFVGIDIKRYQSGHTHCRDTINKRGNKKARKLLFWVIMNIIRGQHHYDNHVVDYYYKLRKQPNEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQMSPH
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available