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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS00380 [old locus tag: SAUSA300_0075 ]
  • pan locus tag?: SAUPAN000823000
  • symbol: SAUSA300_RS00380
  • pan gene symbol?: opp-3C
  • synonym:
  • product: ABC transporter permease

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS00380 [old locus tag: SAUSA300_0075 ]
  • symbol: SAUSA300_RS00380
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: +
  • coordinates: 82906..83673
  • length: 768
  • essential: unknown

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGAAAAAATATCAAACGTACATCGCAATAGGTTCACTATTGAGTTTGATGGTTGTATTA
    ATTACGTATGGTTTAATGCAAGACACGCAACATTTGAACCCACTTGAGTCACCTAATGGA
    CAACATTGGTTGGGTACCGATCAATTAGGCAGAGACTTCTTAGTAAGACTGATTGTCGGT
    AGTCTTGTCACATTGAGTTTAACAGGCATAGTGATTCTATTAAGCGTTTGTATGGGACTT
    ATCTTTGGCTTAATTGCAGGCATAGAAAGACGATGGTTAGATCAAATCATCATGTTTGTT
    GCCGATATGTTGCTGGCTATTCCGTCATTTATTATCGCATTAGTCATCTTAAGTTTAGTA
    AGTAACTCCATGATAGGTTTGATACTTGCTTTAACGATTGGATGGATAGGACGTTATTTA
    CGTTACTTCAGAAATTTAACGCGAGATATTCAAAAACGTCCATTTGTTCAATATGCACGA
    TTGAGTGGGAACTCAACATTCAAAACGACAGTAACACATGTGATTCCACATTTATTAAGT
    AGTATATTCGCTTTGGTAACGGCTGACTTTGGCAAAATGATGCTCAGCATATCTGGACTT
    GCTTTTCTAGGACTAGGTATTAAACCGCCGACGCCTGAGTTAGGAACAATTCTTTTTGAT
    GGGAAAAGTTATTTCAACGGCGCACCGTGGCTCTTCTTCTTCCCTGGTGTATTGTTAGGA
    GGTTTCGCCTTATTATGTCAAATTATCAACAAAAAAATAACGCAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    768

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_RS00380 [old locus tag: SAUSA300_0075 ]
  • symbol: SAUSA300_RS00380
  • description: ABC transporter permease
  • length: 255
  • theoretical pI: 10.1061
  • theoretical MW: 28224.7
  • GRAVY: 0.747843

Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 180.3)
    and 5 more
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 35.1)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel ABC transporter, permease subunit NikB (TIGR02789; EC 3.6.3.24; HMM-score: 29.4)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, permease protein PstA (TIGR00974; HMM-score: 15.5)
    Metabolism Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 9.3)
    ectoine/hydroxyectoine ABC transporter, permease protein EhuD (TIGR03003; HMM-score: 8.3)
  • TheSEED: see SAUSA300_0075
  • PFAM:
    BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 74.8)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.188062
    • TAT(Tat/SPI): 0.000408
    • LIPO(Sec/SPII): 0.049847
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKKYQTYIAIGSLLSLMVVLITYGLMQDTQHLNPLESPNGQHWLGTDQLGRDFLVRLIVGSLVTLSLTGIVILLSVCMGLIFGLIAGIERRWLDQIIMFVADMLLAIPSFIIALVILSLVSNSMIGLILALTIGWIGRYLRYFRNLTRDIQKRPFVQYARLSGNSTFKTTVTHVIPHLLSSIFALVTADFGKMMLSISGLAFLGLGIKPPTPELGTILFDGKSYFNGAPWLFFFPGVLLGGFALLCQIINKKITQ

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]