PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_RS00400 [old locus tag: SAUSA300_0079 ]
• pan locus tag^?: SAUPAN000629000
• symbol: SAUSA300_RS00400
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_RS00400 [old locus tag: SAUSA300_0079 ]
• symbol: SAUSA300_RS00400
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 88136..88681
• length: 546
• essential: unknown

⊟Accession numbers

• Location: NC_007793 (88136..88681) NCBI
• BioCyc: see SAUSA300_0079
• MicrobesOnline: see SAUSA300_0079

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
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  421
  481
  541
  
  ATGATTAAAAAATTATTTTTTATGATATTAGGATCATTACTAATATTATCAGCTTGCTCC
  AATAATGATGAAAAAGATAAAGACACTAATGACCAAAAAAGTGAGAGCCATATGAAGCAT
  AATGATGAAAGTAAAGTTCCAGAAGATATGAAATCGACTAATGAGGGTGAATTTAAAGTG
  GGAGATAAAGTAACGATTACAGCAGGGCATATGCCAGGTATGAAAGGTGCAGAAGCTACT
  GTAAAAGGTGCGTATAAAACATATGCCTATGTTGTAAGTTATAAACCCACAAATGGAAAT
  GAAAAAGTAAACAATCATAAATGGGTCGTAAACGAAGAGATTAAAGATGCACCTAAAGAT
  GGATTTAGTAAGGGCGATACTGTTAAATTAGAAGCAAGTCATATGTCTGGTATGAAAGGT
  GCTACAGCCAATATAGATAACGTGAAAAAGACTACTGTTTACGTAGTTGATTACAAATCC
  AAAGATAATGGTAAAATCATTAAAAATCATAAATGGATGACAGGAAATGAGCTGAAAGCA
  CGATAA
  60
  120
  180
  240
  300
  360
  420
  480
  540
  546
  

⊟Protein

⊟General

• locus tag: SAUSA300_RS00400 [old locus tag: SAUSA300_0079 ]
• symbol: SAUSA300_RS00400
• description: hypothetical protein
• length: 181
• theoretical pI: 9.60078
• theoretical MW: 20135.8
• GRAVY: -0.817127

⊟Function

• TIGRFAM:
  Cellular processes Cellular processes Sporulation and germination sporulation lipoprotein, YhcN/YlaJ family (TIGR02898; HMM-score: 33.8)
  and 2 more
  NusG family protein (TIGR01956; HMM-score: 20.4)
  Genetic information processing Transcription Transcription factors transcription elongation factor/antiterminator RfaH (TIGR01955; HMM-score: 19.8)
• TheSEED: see SAUSA300_0079
• PFAM:
  no clan defined DUF1541; Protein of unknown function (DUF1541) (PF07563; HMM-score: 159.7)
  and 2 more
  ETAP (CL0610) NHase_beta; Nitrile hydratase beta subunit (PF02211; HMM-score: 12.7)
  no clan defined DUF3221; Protein of unknown function (DUF3221) (PF11518; HMM-score: 8.2)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 3.33
  • Cellwall Score: 3.33
  • Extracellular Score: 3.33
  • Internal Helices: 0
• LocateP:
• SignalP: Signal peptide LIPO(Sec/SPII) length 18 aa
  • SP(Sec/SPI): 0.000364
  • TAT(Tat/SPI): 0.000068
  • LIPO(Sec/SPII): 0.999325
  • Cleavage Site: CS pos: 18-19. LSA-CS. Pr: 0.9999
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446514804 NCBI
• RefSeq: WP_000592150 NCBI
• UniProt: see SAUSA300_0079

⊟Protein sequence

• MIKKLFFMILGSLLILSACSNNDEKDKDTNDQKSESHMKHNDESKVPEDMKSTNEGEFKVGDKVTITAGHMPGMKGAEATVKGAYKTYAYVVSYKPTNGNEKVNNHKWVVNEEIKDAPKDGFSKGDTVKLEASHMSGMKGATANIDNVKKTTVYVVDYKSKDNGKIIKNHKWMTGNELKAR

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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