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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS01785 [old locus tag: SAUSA300_0336 ]
- pan locus tag?: SAUPAN001870000
- symbol: SAUSA300_RS01785
- pan gene symbol?: mepB
- synonym:
- product: hypothetical protein
⊟Additional information (user-provided)[edit | edit source]
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS01785 [old locus tag: SAUSA300_0336 ]
- symbol: SAUSA300_RS01785
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 388912..389352
- length: 441
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (388912..389352) NCBI
- BioCyc: SAUSA300_RS01785 BioCyc
- MicrobesOnline: see SAUSA300_0336
⊟Phenotype[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟DNA sequence[edit | edit source]
- 1
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361
421ATGTGTAAATCTAAAATACTGTTGAAAAATATTTTTAGTGAAGAATCAGAAGTTAAAGAT
TTAACTGAAGAAAAATATAATCAAGATTACGAAGCATTAACATTTAGCTTTAAAGAGGAA
ACATATCAAAGTAGGTTAGCTAAGAAAACACCGACTAAATCGGGATATTTCGTGACATGT
TGGACAAAAGACGAAGATAATTATAATCGGCCATACAAAATTGAAGAGTTTGCTGATTAC
CTGATTGTTGCTGTTATCGATGATGAATTAAATGGCTACTTTCTATTTCCTAGGGAATTA
TTGGTAGAAAAAGGTATCTTAGCTTCATCTAAGTATCAAGGGAAAATGGCTTTTAGAGTT
TATCCTAAGTGGTGTAATCAATTGAATAAAACAGCAGGGCAAACACAAAAGTGGCAATGT
AAATATTTTTTTGAATACTAA60
120
180
240
300
360
420
441
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS01785 [old locus tag: SAUSA300_0336 ]
- symbol: SAUSA300_RS01785
- description: hypothetical protein
- length: 146
- theoretical pI: 6.59189
- theoretical MW: 17460.7
- GRAVY: -0.694521
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_0336
- PFAM: PDDEXK (CL0236) MepB-like; MepB-like (PF08877; HMM-score: 168.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.8454
- Cytoplasmic Membrane Score: 0.0109
- Cell wall & surface Score: 0.0007
- Extracellular Score: 0.143
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.017361
- TAT(Tat/SPI): 0.002036
- LIPO(Sec/SPII): 0.00251
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 446257477 NCBI
- RefSeq: WP_000335332 NCBI
- UniProt: see SAUSA300_0336
⊟Additional information (user-provided)[edit | edit source]
⊟Protein sequence[edit | edit source]
- MCKSKILLKNIFSEESEVKDLTEEKYNQDYEALTFSFKEETYQSRLAKKTPTKSGYFVTCWTKDEDNYNRPYKIEEFADYLIVAVIDDELNGYFLFPRELLVEKGILASSKYQGKMAFRVYPKWCNQLNKTAGQTQKWQCKYFFEY
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Additional information (user-provided)[edit | edit source]
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Additional information (user-provided)[edit | edit source]
⊟Other information (user-provided)[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]