From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS03700 [old locus tag: SAUSA300_0689 ]
  • pan locus tag?: SAUPAN002589000
  • symbol: SAUSA300_RS03700
  • pan gene symbol?: csbB
  • synonym:
  • product: glycosyltransferase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS03700 [old locus tag: SAUSA300_0689 ]
  • symbol: SAUSA300_RS03700
  • product: glycosyltransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 765131..766114
  • length: 984
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAAAATTAGAGTCGTCATTCCTTGTTTTAATGAAGGGGAAGTCATTACACAAACACAT
    CAACAATTAACTGAAATACTTTCACAAGATAGTAGTGTGAAAGGCTATGATTATAATATG
    CTTTTCATAGATGATGGTAGTACGGATACCACTATAGATGAAATGCAACATCTTGCCACA
    ATAGATAGGCATGTCAGCTTTATTTCTTTTAGTAGAAATTTTGGAAAAGAAGCAGCTATG
    ATTGCAGGTTACCAGCATAGTACTGAATTTGATGCAGTCATCATGATAGATTGTGATTTG
    CAACATCCACCTGAATATATTCCGAAAATGGTTGAAGGTTTTATGGAAGGCTATGATCAA
    GTGATTGCAAAGCGTGATAGAAGTGGTGAAAATTTTAGTCGCAAAACATTAAGCCATTTG
    TATTATAAGTTAGTTAATTGCTTTGTAGAAGAAGTACAATTTGATGATGGTGTTGGTGAT
    TTTAGACTTTTAAGCCAAAGAGCTGTTAAATCCATTGCATCACTTGAAGAATATAATCGA
    TTTTCAAAAGGGTTATTTGAATGGATAGGCTATAATACTAAAGTGTTTACGTATCAAAAT
    GTTGAGAGACAAAAAGGGGAATCTAAGTGGTCCTTTAAAAAGTTATTTAATTATGGTATT
    GATGGATTGATTTCCTTTAATAGTAAACCTTTGAGAATGATGATTTATCTTGGCTTGTTT
    ATCTTTTCAATAAGCGTGTTATATATTATCTATTTATTCATCAATATTATGATATCTGGT
    GTTAATATTCCGGGATATTTTTCAACGATTGCAGCTATTTTATTATTAGGCGGCATACAG
    TTAATTTCAATTGGTGTTGTAGGTGAATATATTGGCAGGATATATTATGAAGTTAAGGCA
    CGTCCTAAATATATTATTCAAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGAT
    ACCCATAAAGTTTATTCTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    984

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS03700 [old locus tag: SAUSA300_0689 ]
  • symbol: SAUSA300_RS03700
  • description: glycosyltransferase
  • length: 327
  • theoretical pI: 5.92494
  • theoretical MW: 37576.9
  • GRAVY: -0.0776758

⊟Function[edit | edit source]

  • TIGRFAM:
    poly-beta-1,6 N-acetyl-D-glucosamine synthase (TIGR03937; EC 2.4.1.-; HMM-score: 47.8)
    glycosyltransferase, TIGR04182 family (TIGR04182; HMM-score: 42.7)
    and 4 more
    chitooligosaccharide synthase NodC (TIGR04242; EC 2.4.1.-; HMM-score: 31.8)
    hopene-associated glycosyltransferase HpnB (TIGR03469; HMM-score: 20.3)
    Unknown function Enzymes of unknown specificity transferase 2, rSAM/selenodomain-associated (TIGR04283; EC 2.-.-.-; HMM-score: 20.2)
    mycofactocin system glycosyltransferase (TIGR03965; HMM-score: 17.4)
  • TheSEED: see SAUSA300_0689
  • PFAM:
    GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 89.9)
    and 3 more
    Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 30.3)
    Glyco_tranf_2_2; Glycosyltransferase like family 2 (PF10111; HMM-score: 18.6)
    Glyco_transf_21; Glycosyl transferase family 21 (PF13506; HMM-score: 14.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.04
    • Cytoplasmic Membrane Score: 9.96
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 2
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008519
    • TAT(Tat/SPI): 0.000197
    • LIPO(Sec/SPII): 0.000941
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKIRVVIPCFNEGEVITQTHQQLTEILSQDSSVKGYDYNMLFIDDGSTDTTIDEMQHLATIDRHVSFISFSRNFGKEAAMIAGYQHSTEFDAVIMIDCDLQHPPEYIPKMVEGFMEGYDQVIAKRDRSGENFSRKTLSHLYYKLVNCFVEEVQFDDGVGDFRLLSQRAVKSIASLEEYNRFSKGLFEWIGYNTKVFTYQNVERQKGESKWSFKKLFNYGIDGLISFNSKPLRMMIYLGLFIFSISVLYIIYLFINIMISGVNIPGYFSTIAAILLLGGIQLISIGVVGEYIGRIYYEVKARPKYIIQATNLSSLENDEKDTHKVYSK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SAUSA300_RS03700&oldid=68817"