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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS04865 [old locus tag: SAUSA300_0904 ]
  • pan locus tag?: SAUPAN003174000
  • symbol: SAUSA300_RS04865
  • pan gene symbol?: yjbI
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS04865 [old locus tag: SAUSA300_0904 ]
  • symbol: SAUSA300_RS04865
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 992706..993071
  • length: 366
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGACAACAACACCATATGACATCATTGGTAAAGAAGCGTTATACGATATGATTCATTAT
    TTTTACACCCTTGTAGAAAAAGATGAACGACTTAATCACCTGTTTCCAGGAGATTTTGCA
    GAAACAAGTCGTAAACAAAAACAATTTTTAACACAGTTTTTGGGCGGTCCAAACATTTAT
    ACCGAAGAACACGGACATCCTATGCTAAGAAAAAGACATATAGATTTTACAATCACTGAA
    TTTGAAAGAGATGCATGGTTAGAAAATATGCAGACAGCAATTAATCGCGCTGCGTTTCCA
    CAAGGTGTTGGAGATTATTTATTTGAGCGCTTAAGATTAACTGCTAATCATATGGTGAAT
    TCCTAA
    60
    120
    180
    240
    300
    360
    366

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS04865 [old locus tag: SAUSA300_0904 ]
  • symbol: SAUSA300_RS04865
  • description: hypothetical protein
  • length: 121
  • theoretical pI: 6.23201
  • theoretical MW: 14302.1
  • GRAVY: -0.564463

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SAUSA300_0904
  • PFAM:
    Globin (CL0090) Bac_globin; Bacterial-like globin (PF01152; HMM-score: 90.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.001854
    • TAT(Tat/SPI): 0.000566
    • LIPO(Sec/SPII): 0.000228
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTTTPYDIIGKEALYDMIHYFYTLVEKDERLNHLFPGDFAETSRKQKQFLTQFLGGPNIYTEEHGHPMLRKRHIDFTITEFERDAWLENMQTAINRAAFPQGVGDYLFERLRLTANHMVNS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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