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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS05520 [old locus tag: SAUSA300_1026 ]
  • pan locus tag?: SAUPAN003354000
  • symbol: SAUSA300_RS05520
  • pan gene symbol?: —
  • synonym:
  • product: DNA-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS05520 [old locus tag: SAUSA300_1026 ]
  • symbol: SAUSA300_RS05520
  • product: DNA-binding protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1121387..1121944
  • length: 558
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAAATGGTCAATTACGCAATTAAGGAAATATCAAGGTAAGCCATTTGAATTTGATCAA
    ACGGTGAGTTTTGACAATTTAAAAGAATCATTAGATTTAATTGATTTATCTCCAATTACA
    ATCCAAGGTCAGTTAACCATTAAGTCAACAGAAGTCGTTGCGGATATTCACATTACTGGA
    ACGTATACAATGCCTTGTGCACGTACTCTTGTACCAGTAAAAGTCCCACTAGATGTAACT
    ACTACAGAAGTATTTGATTTAGAAGGGTACAATCAGTATAACGATGATCAAGATGATGTA
    GATGAACACTATCACATTATTAAAGATGGTATGGTTAATCTTCAGGATATTGTCGAGGAT
    ATAGTTATTATTGAGAAACCAATGAGAGCTTATTCAGAGCAAAGTGACCAAATGTTGACA
    GTAGGTAATGGTTGGGAAGTAATCGATGAGGATCAATTAGATGAGCTTGCTAAACAGCAA
    GAACAAGATGATTCAGAATCACGACAAGTTGATCCAAGGCTTCAAAAATTACAACAATTA
    TATGATAAAGAGCAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    558

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS05520 [old locus tag: SAUSA300_1026 ]
  • symbol: SAUSA300_RS05520
  • description: DNA-binding protein
  • length: 185
  • theoretical pI: 3.99168
  • theoretical MW: 21414.7
  • GRAVY: -0.627027

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SAUSA300_1026
  • PFAM:
    no clan defined DUF177; Uncharacterized ACR, COG1399 (PF02620; HMM-score: 74.4)
    and 1 more
    Cdc48_2-like (CL0402) CDC48_2; Cell division protein 48 (CDC48), domain 2 (PF02933; HMM-score: 15.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011212
    • TAT(Tat/SPI): 0.000243
    • LIPO(Sec/SPII): 0.000326
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKWSITQLRKYQGKPFEFDQTVSFDNLKESLDLIDLSPITIQGQLTIKSTEVVADIHITGTYTMPCARTLVPVKVPLDVTTTEVFDLEGYNQYNDDQDDVDEHYHIIKDGMVNLQDIVEDIVIIEKPMRAYSEQSDQMLTVGNGWEVIDEDQLDELAKQQEQDDSESRQVDPRLQKLQQLYDKEQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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